HTHLYSR: LysR bacterial regulatory protein HTH signature
Seed alignment containing 14 sequences:

                       1         11        21        31        41        51        61        71        81        91        101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331  
                       |---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|----
 OXYR_ECOLI            ------MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVKESEAFIEVPLFDEPMLLAIYEDHPWANRECVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPCIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRARMDGHFDKVLKQAV  
CATR_PSEPU ------MELRHLRYFKVLAETLNFTRAAELLHIAQPPLSRQISQLEDQLGTLLVVRERPLRLTEAGRFFYEQSCTVLQLQNISDNTRRIGQGQRQWLGIGFAPSTLYKVLPELIRELRQDSELELGLNEMTTLQQVEALKSGRIDIAFGRIRIDDPAIHQQVLCEDPLVAVLPKDHPLASSPLTLAQLAGEAFILYPANPRPSYADHVLALFAHHGMSIHVSQWANELQTAIGLVAVGVGVTLVPASVQQQHRTDIEYVSLLDSGAVSPIILSRRKGDVSPIVQRCLTLIAQQAE
MLER_LACLA ----MSLNLRDLEYFYQLSKLRSFTNVAKHFRVSQPTISYAIKRLETYYDCDLFYKDSSHQVVDLTPEGELLAMRTN---EILSELNHTKKAIHRSSMKDFKVGFPPIISSYLLSKQDNLNFFNALHMIYGGSNELLSLLLNEEIDSSLLGSLEKIKHPQLEIEELFQKEFFIIMSDSHPLANEKELGFKDLLNEDFILLGEHNIHFNAFNRLNEKYNQSANVVLKLDDAHTIKELVRKNLGISLMADIRLSEDFKNLVKVPFIEEDKQFFHINYAYQKNSILSESEKNFLEILKTLK
SYRM_RHIME ---------MDQPTWKRPHRAKFAGVSDAAQQRQMPNLASIDLNLLVDLEALLQYRHITQAAQHVGRSQPAMSRALSRLRGMLKDDLLVAGSRGLVLTPLAECLTQMLPSVLDAIRQMMNLSLAPAQRRWKVTMAMPDHQAVVLLPHLLPRLHERAPHLDIVTDPLLGGALGLLEQGEIDVVVGQMGAAPLGYLRRRLYADSFTCVLRHNHPALAQEWTIEAFAALRHVAIASEPDELFGQIYDRLTKLGLQRGDPMVVSTVLTAAVLIAATDSVLVVPSRVATRVAAMLSLAVIPPPVELRPYEVALIWHERCHRDPEHRWLRGEIAAAASTAG
NOD1_BRAJA -MRFKGLDLNLLVALDALMTERKLTAAARSINLSQPAMSAAITRLRTYFRDELFTMNGRELVPTPRAEALAPAVREALLHIHLSIISWDPFNPAQSDRSFRIILSDFMTLMFFERVVVRVAREAPAVSFELLPFSDEPDELLRRGDVDFLILPEMFMSHTHPRAKLFDERFVCVSCPTNQKLPPQLSIDNYVSMGHVAAQFGKQRPSVEEWLLREHGLRRRVEVAVPGFTMIPPFLSGTDRIATLPLRLAMHFAKAIPLRITELPQPIFPAFTEAVQWPAPHSSDPASLWMREIFLQEASRVEFQSETSAHALSSSQLPTCL
AMPR_PSEAE -MVRPHLPLNALAAFEASARHLSFTRAAIELCVTQAAVSHQVKSLEERLGVALFKRLPRGLMLTHEGESLLPVLCDSFDRIAGLLERFEGGHYRDVLTVGAVGTFTVGWLLPRLEDFQARHPFIDLRLSTHNNRVDIAAEGLDYAIRFGGGAWHGTEALALFEAPLTVLCCPEVAAQLHSPADLLQHTLLRSYRADEWPLWFQAAGLPAHAPLTRSIVFDTSLAMLEAARQGVGVALGPAAMFARQLASESIRRPFATEVSTGSYWLTRLQSRGETSAMLAFRGWLLEMAAVEARGR
CYSB_SALTY -----MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRSIVVTPDHPLAATSSVTIEALAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDPLADPDLVRIDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVVDTAVALRSNEEIEAMFQDIKLPEK
ILVY_ECOLI ------MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLGQPLFVRDNRTVTLTEAGEELRVFAQQTLLQYQQLRHTIDQQGPSLSGELHIFCSVTAAYSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLAVVLIAPALPCPVRNQVSVEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPMIYATVGGHEAMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCAQKKRLHEPLIEAFWKILPNHK
NODD_RHILE -MRFKGLDLNLLVALDRLMTERKLTAAARAINLSQPAMSAAISRWRDYFRDDLFIIQRRELNPTPAAEPLAPVVREALLHIQLSVIAWDPINPAEFDRRFRIILSDFMALVFFEKIIVRLAREAPGVSFKLLPLDDDPEELLRRGDVDFLILPDLFMSGAHRKARLFEERLVCVGCSTNEQLQGKLFLEQYMSMGHVAAKFGRGLKPSVEQWLLLQQGLKRRIELVVPGFNLIPPLLSGTNRIATIPLRLVKHYEQTIPLRIIEHPLPLLSFTEAVQWPALHNSDPGNIWMREIMIQEASRHWNPRPKVVRLKRPRSFHSRSS
LYSR_ECOLI ---MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEKVIGLKLFERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLPVFSQSFLPQLLQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTERTELLSLDEVCVLPPGHPLAVKKVLTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKRRMIVETHSAASVCAMVRAGVGISVVNPLTALDYAASGLVVRRFSIAVPFTVSLIRPLHRPSSALVQAFSGHLQAGLPKLVTSLDAILSSATTA
TFDS_ALCEU ------MEFRQLRYFVAAAEEGNVGAAARRLHISQPPVTRQIHALEQHLGVLLFERSARGVQLTPAGAAFLEDARRM--LELGRTSVDRSRAASRGEIGQLDIGYLGTAIYQTVPALLHAFTQAVPGATLSLALMPKVRQIEALRAGTIHLGVGRFYPQEPGITVEHLHYERLYIAAGSSIARQLRQD
ICIA_ECOLI ---MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSLATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLGALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMIPHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPESRMMRKVTDALLDYGHKVLRQD
GLTC_BACSU MDVRQTWSLRQLRYFMEVAEREHVSEAADHLHVAQSAISRQIANLEEELNVTLFEREGRNIKLTPIGKEFLIHVKTAMKAIDYAKEQIDEYLDPHRGTVKIGFPTSLASQLLPTVISAFKEEYPHVEFLLRQGSYKFLIEAVRNRDIDLALLGPVPTNFSDITGKILFTEKIYALVPLNHPLAKQKTVHLIDLRNDQFVLFPEGFVLREMAIDTCKQAGFAPLVSTEGEDLDAIKGLVSAGMGVTLLPESTFAETTPRFTVKIPIEFPQVKRTVGIIKPKNRELAPSANDFYEFVIQFFSKLEQYQ
VRPR_SALDU ---MDFLINKKLKIFITLMETGSFSIATSVLYITRTPLSRVISGLERELKQRLFIRKNGTLIPTEFAQTIYRKVKSHYIFLHALEQEIGPTGKTKQLEIIFDEIYPESLKNLIISALTISGQKTNIMGRAVNSQIIEELCQTNNCIVISARNYFHRESLVCRTSVEGGVMLFIPKKFFLCGKPDINRLAGTPVLFHEGAKNFNLDTIYHFFEQTLGITNPAFSFDNVDLFSSLYRLQQGLAMLLIPVRVCRALGLSTDHALHIKGVALCTSLYYPTKKRETPDYRKAIKLIQQELKQSTF