WORKLIST ENTRIES (1):

CLPPROTEASEA View alignment View Structure    ATP-dependent Clp protease ATP-binding subunit signature
 Type of fingerprint: COMPOUND with 4  elements
Links:
   INTERPRO; IPR001270
   PROSITE; PS00870 CLPAB_1; PS00871 CLPAB_2
   PFAM; PF00495 clpA_B

 Creation date 11-NOV-1994; UPDATE 27-JUN-1999

   1. GOTTESMAN, S., SQUIRES, C., PICHERSKY, E., CARRINGTON, M., HOBBS, M.,
   MATTICK, J.S., DALRYMPLE, B., KURAMITSU, H., SHIROZA, T., FOSTER, T.,
   CLARK, W.P., ROSS, B., SQUIRES, C.L. AND MAURIZI, M.R.
   Conservation of the regulatory subunit for the CLP ATP-dependent protease
   in prokaryotes and eukaryotes.
   PROC.NATL.ACAD.SCI.U.S.A. 87 3513-3517 (1990).

   2. PARSELL, D.A., SANCHEZ, Y., STITZEL, J.D. AND LINDQUIST, S.
   HSP104 is a highly conserved protein with 2 essential nucleotide-
   binding sites.
   NATURE 353 270-273 (1991).

   An evolutionary relationship has been demonstrated in a group of ATP-
   binding proteins that includes the regulatory subunit of the ATP-dependent
   protease clpA; heat shock proteins clpB, 104 and 78; and chloroplast
   proteins CD4a and CD4b [1,2]. The proteins are thought to protect cells
   from stress by controlling the aggregation and denaturation of vital
   cellular structures. They vary in size, but share 2 conserved 200-amino
   acid domains, each of which contains an ATP-binding site.
  
   CLPPROTEASEA is a 4-element fingerprint that provides a signature for ATP-
   dependent CLP protease ATP-binding subunits. The fingerprint was derived
   from an initial alignment of 4 sequences: the motifs were drawn from
   the second domain, in the region of the ATP-binding site (cf. PROSITE
   patterns CLPAB_1 (PS00870) and CLPAB_2 (PS00871)). Two iterations on
   OWL24.0 were required to reach convergence, at which point a true set
   comprising 18 sequences was identified. Amongst the partial matches was
   the hypothetical protein of the putative ATP operon from Mycobacterium
   leprae, which is a fragment lacking the last motif; and strong matches
   with motif 1 were also made by a transmembrane ATPase from L.lactis, and
   DNA polymerase III, which contains an ATP-binding site.
  
   An update on SPTR37_9f identified a true set of 59 sequences, and 1
   partial match.

  SUMMARY INFORMATION
     59 codes involving  4 elements
      1 codes involving  3 elements
      0 codes involving  2 elements

   COMPOSITE FINGERPRINT INDEX
  
    4|  59   59   59   59  
    3|   0    1    1    1  
    2|   0    0    0    0  
   --+---------------------
     |   1    2    3    4  

True positives..
 O87444         O68185         CLPB_SYNY3     Q48760         
 CLPB_SYNP7     O67325         CLPB_ECOLI     Q39889         
 O53719         MECB_BACSU     Q55662         H101_ARATH     
 Q55023         CLAB_LYCES     CLPA_PEA       CLPC_PORPU     
 CLPB_HAEIN     P74459         O67588         Q25317         
 CLAA_LYCES     CLPB_CORGL     O83110         CLPC_GUITH     
 CLPB_HELPY     O81723         O48931         O69936         
 O34209         HLYB_TREHY     CLPB_MYCPN     CLPB_BACNO     
 CLP_TRYBB      CLPC_ODOSI     O00828         CLPB_MYCGE     
 O83560         ERD1_ARATH     Q12137         O06286         
 Q25646         CLPA_RHOBL     O83779         HSP7_YEAST     
 O84115         O74402         O84288         O69287         
 O31673         O23323         CLPA_ECOLI     Q25823         
 O24875         O26384         CLPL_LACLA     H104_YEAST     
 SKD3_MOUSE     AMIB_PSEAE     ADPR_RHOER     
Subfamily:  Codes involving 3 elements
 Subfamily True positives..
 O51774         


  PROTEIN TITLES
   O87444           HEAT SHOCK PROTEIN - PLECTONEMA BORYANUM.
   O68185           CLPB CHAPERONE HOMOLOG - LACTOCOCCUS LACTIS (SUBSP. CREMORIS
   CLPB_SYNY3       CLPB PROTEIN - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
   Q48760           CLPC ATPASE - LISTERIA MONOCYTOGENES.
   CLPB_SYNP7       CLPB PROTEIN - SYNECHOCOCCUS SP. (STRAIN PCC 7942) (ANACYSTI
   O67325           ATP-DEPENDENT CLP PROTEASE - AQUIFEX AEOLICUS.
   CLPB_ECOLI       CLPB PROTEIN (HEAT SHOCK PROTEIN F84.1) - ESCHERICHIA COLI.
   Q39889           HEAT SHOCK PROTEIN - GLYCINE MAX (SOYBEAN).
   O53719           CLPB HEAT SHOCK PROTEIN - MYCOBACTERIUM TUBERCULOSIS.
   MECB_BACSU       NEGATIVE REGULATOR OF GENETIC COMPETENCE MECB - BACILLUS SUB
   Q55662           ATP-DEPENDENT CLP PROTEASE REGULATORY SUBUNIT - SYNECHOCYSTI
   H101_ARATH       HEAT SHOCK PROTEIN 101 - ARABIDOPSIS THALIANA (MOUSE-EAR CRE
   Q55023           CLPC - SYNECHOCOCCUS SP.
   CLAB_LYCES       ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG 
   CLPA_PEA         ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG 
   CLPC_PORPU       ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG 
   CLPB_HAEIN       CLPB PROTEIN - HAEMOPHILUS INFLUENZAE.
   P74459           CLPB PROTEIN - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
   O67588           ATPASE SUBUNIT OF ATP-DEPENDENT PROTEASE - AQUIFEX AEOLICUS.
   Q25317           100 KDA HEAT SHOCK PROTEIN (HSP100) - LEISHMANIA MAJOR.
   CLAA_LYCES       ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG 
   CLPB_CORGL       CLPB PROTEIN - CORYNEBACTERIUM GLUTAMICUM (BREVIBACTERIUM FL
   O83110           ATP-DEPENDENT CLP PROTEASE SUBUNIT B (CLPB) - TREPONEMA PALL
   CLPC_GUITH       ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG 
   CLPB_HELPY       CLPB PROTEIN - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
   O81723           ATP-DEPENDENT CLP PROTEINASE - LIKE PROTEIN - ARABIDOPSIS TH
   O48931           CLPC - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
   O69936           CLP PROTEASE ATP BINDING SUBUNIT - STREPTOMYCES COELICOLOR.
   O34209           CLPB/HSP100 - SYNECHOCOCCUS SP. (STRAIN PCC 7942) (ANACYSTIS
   HLYB_TREHY       HEMOLYSIN B - TREPONEMA HYODYSENTERIAE (SERPULINA HYODYSENTE
   CLPB_MYCPN       CLPB PROTEIN - MYCOPLASMA PNEUMONIAE.
   CLPB_BACNO       CLPB PROTEIN - BACTEROIDES NODOSUS (DICHELOBACTER NODOSUS).
   CLP_TRYBB        HEAT SHOCK PROTEIN 100 (CLP PROTEIN) - TRYPANOSOMA BRUCEI BR
   CLPC_ODOSI       ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG 
   O00828           HEAT SHOCK PROTEIN 100 - LEISHMANIA DONOVANI.
   CLPB_MYCGE       CLPB PROTEIN - MYCOPLASMA GENITALIUM.
   O83560           ATPASE (CLPC) - TREPONEMA PALLIDUM.
   ERD1_ARATH       ERD1 PROTEIN PRECURSOR - ARABIDOPSIS THALIANA (MOUSE-EAR CRE
   Q12137           HSP78P - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
   O06286           CLPC - MYCOBACTERIUM TUBERCULOSIS.
   Q25646           CLPB - PLASMODIUM BERGHEI.
   CLPA_RHOBL       CLPA HOMOLOG PROTEIN - RHODOPSEUDOMONAS BLASTICA.
   O83779           ATP-DEPENDENT CLP PROTEASE SUBUNIT A (CLPA) - TREPONEMA PALL
   HSP7_YEAST       MITOCHONDRIAL HEAT SHOCK PROTEIN 78 PRECURSOR - SACCHAROMYCE
   O84115           CLP PROTEASE ATPASE - CHLAMYDIA TRACHOMATIS.
   O74402           CHAPERONIN HSP78P - SCHIZOSACCHAROMYCES POMBE (FISSION YEAST
   O84288           CLPC PROTEASE ATPASE - CHLAMYDIA TRACHOMATIS.
   O69287           HEAT SHOCK PROTEIN - CAMPYLOBACTER JEJUNI.
   O31673           ATP-DEPENDENT CLP PROTEASE-LIKE - BACILLUS SUBTILIS.
   O23323           HEAT SHOCK PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
   CLPA_ECOLI       ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA - ESCHER
   Q25823           COMPLETE GENE MAP OF PLASTID-LIKE DNA (IR-B) - PLASMODIUM FA
   O24875           ATP-DEPENDENT C1P PROTEASE (CLPA) - HELICOBACTER PYLORI (CAM
   O26384           ATP-DEPENDENT CLP PROTEASE REGULATORY SUBUNIT - METHANOBACTE
   CLPL_LACLA       ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT CLPL - LACTOCOCCU
   H104_YEAST       HEAT SHOCK PROTEIN 104 - SACCHAROMYCES CEREVISIAE (BAKER'S Y
   SKD3_MOUSE       SKD3 PROTEIN - MUS MUSCULUS (MOUSE).
   AMIB_PSEAE       ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT-LIKE PROTEIN AMIB
   ADPR_RHOER       ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT-LIKE PROTEIN - RH
 
   O51774           ATP-DEPENDENT CLP PROTEASE, SUBUNIT C (CLPC) - BORRELIA BURG

SCAN HISTORY OWL24_0 2 100 NSINGLE SPTR37_9f 2 90 NSINGLE INITIAL MOTIF SETS CLPPROTEASEA1 Length of motif = 19 Motif number = 1 CLPA protease motif I - 1 PCODE ST INT FLFLGPTGVGKTELCKALA CLPB_ECOLI 601 601 FLFLGPTGVGKTELCRTLA CLPB_BACNO 606 606 YLFTGPTGVGKTEVAKQLA CLPA_RHOBL 521 521 FLFAGPTGVGKTEVTVQLS CLPA_ECOLI 491 491 CLPPROTEASEA2 Length of motif = 19 Motif number = 2 CLPA protease motif II - 1 PCODE ST INT LVGAPPGYVGYEEGGYLTE CLPB_ECOLI 646 26 LIGAPPGYVGYDQGGYLTE CLPB_BACNO 651 26 LIGAPPGYVGFDQGGMLTD CLPA_RHOBL 563 23 VIGAPPGYVGFDQGGLLTD CLPA_ECOLI 533 23 CLPPROTEASEA3 Length of motif = 19 Motif number = 3 CLPA protease motif III - 1 PCODE ST INT LLDEVEKAHPDVFNILLQV CLPB_ECOLI 675 10 LFDEVEKAHSDVFNTLLQV CLPB_BACNO 680 10 LLDEIEKAHPDVYNILLQV CLPA_RHOBL 592 10 LLDEIEKAHPDVFNILLQV CLPA_ECOLI 562 10 CLPPROTEASEA4 Length of motif = 15 Motif number = 4 CLPA protease motif IV - 1 PCODE ST INT DFRNTVVIMTSNLGS CLPB_ECOLI 708 14 DFRHTVIIMTSNLGS CLPB_BACNO 713 14 DFRNVILIMTSNVGA CLPA_RHOBL 625 14 DFRNVVLVMTTNAGV CLPA_ECOLI 595 14 FINAL MOTIF SETS CLPPROTEASEA1 Length of motif = 19 Motif number = 1 CLPA protease motif I - 2 PCODE ST INT FIFLGPTGVGKTELAKALA O87444 618 618 FLFLGPTGVGKTELAKALA O68185 604 604 FIFLGPTGVGKTELAKALA CLPB_SYNY3 607 607 FIFLGPTGVGKTELARALA Q48760 545 545 FIFLGPTGVGKTELAKALA CLPB_SYNP7 616 616 FMFLGPTGVGKTETAKALA O67325 534 534 FLFLGPTGVGKTELCKALA CLPB_ECOLI 601 601 FLFLGPTGVGKTELAKALA Q39889 602 602 FMFLGPTGVGKTELAKALA O53719 603 603 FIFLGPTGVGKTELARALA MECB_BACSU 541 541 FIFSGPTGVGKTELTKALA Q55662 541 541 FLFLGPTGVGKTELAKALA H101_ARATH 602 602 FIFSGPTGVGKTELTKALA Q55023 558 558 FIFSGPTGVGKSELAKALA CLAB_LYCES 639 639 FIFSGPTGVGKSELAKALA CLPA_PEA 639 639 FIFSGPTGVGKTELTKALA CLPC_PORPU 545 545 FLFLGPTGVGKTELCKTLA CLPB_HAEIN 601 601 FLFMGPTGVGKTELARALA P74459 616 616 FLFLGPTGVGKTELSKALA O67588 722 722 FLFLGPTGVGKTELSKAVA Q25317 601 601 FIFSGPTGVGKSELAKSLA CLAA_LYCES 642 642 FLFLGPTGVGKTELAKAVA CLPB_CORGL 604 604 FLCVGPTGVGKTELARTLA O83110 605 605 FIFSGPTGVGKTELTKALA CLPC_GUITH 542 542 FLFLGPTGVGKTESAKALA CLPB_HELPY 601 601 FMFMGPTGVGKTELAKALA O81723 596 596 FIFSGPTGVGKSELAKALA O48931 640 640 FLFLGPTGVGKTELARALA O69936 569 569 FLFLGPTGVGKTELARALA O34209 613 613 FIFLGPTGVGKTALAKVLS HLYB_TREHY 550 550 FIFLGSTGVGKTELAKSLA CLPB_MYCPN 462 462 FLFLGPTGVGKTELCRTLA CLPB_BACNO 606 606 FLFLGPTGVGKTELVKAVA CLP_TRYBB 599 599 FIFAGPTGVGKTELTKALS CLPC_ODOSI 556 556 FLFLGPTGVGKTELSKAVA O00828 601 601 FIFLGSTGVGKTELAKSLA CLPB_MYCGE 462 462 FLFLGPTGVGKTLLAKTLA O83560 538 538 MLFCGPTGVGKTELTKALA ERD1_ARATH 660 660 FMFLGPTGTGKTELTKALA Q12137 537 537 FIFAGPSGVGKTELSKALA O06286 549 549 LMFLGPTGVGKTELSKVLA Q25646 650 650 YLFTGPTGVGKTEVAKQLA CLPA_RHOBL 521 521 LLFVGATGVGKTELARTLA O83779 536 536 FMFLGPTGTGKTKLTKALA HSP7_YEAST 537 537 FLFLGPTGVGKTELAKALA O84115 601 601 FLFLGPTGVGKTALTKALA O74402 535 535 FLFLGPTGVGKTLLAQQIA O84288 567 567 LLFLGPTGVGKTQSAKALA O69287 604 604 FLFVGPTGVGKTELSKTLA O31673 442 442 FLFLGPTGVGKTELAKALA O23323 567 567 FLFAGPTGVGKTEVTVQLS CLPA_ECOLI 491 491 WILCGPSGTGKTELAKILS Q25823 493 493 FLFVGPSGVGKTELAKELA O24875 479 479 FFFAGPTGVGKTFLAKKLA O26384 325 325 FLFVGPTGVGKTELSQALA CLPL_LACLA 507 507 FLFLGLSGSGKTELAKKVA H104_YEAST 610 610 FLFLGSSGIGKTELAKQTA SKD3_MOUSE 347 347 ALFLGPTGVGKTEIVRALA AMIB_PSEAE 92 92 ILLVGPTGVGKTELVRRVA ADPR_RHOER 75 75 CLPPROTEASEA2 Length of motif = 19 Motif number = 2 CLPA protease motif II - 2 PCODE ST INT LIGAPPGYVGYEEGGQLTE O87444 663 26 LVGAPPGYVGYDEGGQLTE O68185 649 26 LMGAPPGYVGYEEGGQLTE CLPB_SYNY3 652 26 LVGAPPGYVGYEEGGQLTE Q48760 590 26 LIGAPPGYVGYDEGGQLTE CLPB_SYNP7 661 26 LIGAPPGYVGYEEGGQLTE O67325 579 26 LVGAPPGYVGYEEGGYLTE CLPB_ECOLI 646 26 LIGAPPGYVGHEEGGQLTE Q39889 647 26 LIGAPPGYVGYEAGGQLTE O53719 648 26 LVGSPPGYVGYDEGGQLTE MECB_BACSU 586 26 LIGSPPGYVGYNEGGQLTE Q55662 586 26 LIGAPPGYVGHEEGGQLTE H101_ARATH 647 26 LIGSPPGYVGYNEGGQLTE Q55023 603 26 LIGSPPGYVGYTEGGQLTE CLAB_LYCES 684 26 LIGSPPGYVGYTEGGQLTE CLPA_PEA 684 26 LIGSPPGYVGYSEGGYLTE CLPC_PORPU 590 26 LVGAPPGYVGYEEGGYLTE CLPB_HAEIN 646 26 LIGAPPGYVGYEEGGQLSE P74459 661 26 LIGAPPGYVGYEEGGKLTE O67588 767 26 LIGTPPGYVGHEEGGQLTE Q25317 646 26 LIGSPPGYVGYTEGGQLTE CLAA_LYCES 687 26 LVGAPPGYVGYDQGGQLTE CLPB_CORGL 649 26 LIGAPPGYVGYDEGGQLTE O83110 650 26 LIGSPPGYVGYNEGGQLTE CLPC_GUITH 587 26 LIGAAPGYVGYEEGGQLTE CLPB_HELPY 646 26 LVGAPPGYVGYEEGGQLTE O81723 641 26 LIGSLPGYVGYTEGGQLTE O48931 685 26 LVGAPPGYVGHEEAGQLTE O69936 614 26 LIGAPPGYIGYEEGGQLSE O34209 658 26 LIGAPPGYVGYEEGGGLTE HLYB_TREHY 595 26 LIGAPPGYVGYEQSGLLTE CLPB_MYCPN 507 26 LIGAPPGYVGYDQGGYLTE CLPB_BACNO 651 26 LIGAPPGYIGHDEGGQLTE CLP_TRYBB 644 26 LIGSPPGYVGYNEGGQLTE CLPC_ODOSI 601 26 LIGAPPGYVGHEEGGQLTE O00828 646 26 LIGAPPGYIGYEQSGLLTE CLPB_MYCGE 507 26 LMGAPPGYVGFENGGLLTE O83560 583 26 LIGSPPGYVGFEEGGMLTE ERD1_ARATH 705 26 LIGAPPGYVLSESGGQLTE Q12137 582 26 LFGAPPGYVGYEEGGQLTE O06286 594 26 LIGAAPGYVGYEQGGLLTD Q25646 695 26 LIGAPPGYVGFDQGGMLTD CLPA_RHOBL 563 23 LIGSPPGYVGFEEGGLLTD O83779 578 23 LIGAPPGYVLSESGGQLTE HSP7_YEAST 582 26 LIGSPPGYVGYEEGGSLSE O84115 646 26 LIGSPPGYIGYEESGELTE O74402 580 26 MMGSPPGYVGHEEGGHLTE O84288 612 26 LLGAPPGYIGHEEGGELTE O69287 649 26 IIGSPPGYVGHEEAGQLTE O31673 487 26 LIGAPPGYYIGHEEGGQLT O23323 612 26 LIGAPPGYVGFDQGGLLTD CLPA_ECOLI 533 23 LIGSPPGYVGYSEGGQLTE Q25823 538 26 LIGSPSGYVGFEQGGLLVN O24875 521 23 LIGSPPGYVGYEQGGQLTN O26384 370 26 LIGTSAGYVGYEDNANTLT CLPL_LACLA 552 26 LLGTTAGYVGYDEGGFLTN H104_YEAST 655 26 FIGSPPGYIGHEEGGQLTK SKD3_MOUSE 393 27 LTGAPPGYVGAKEGTTLLE AMIB_PSEAE 137 26 FSGAPPGYAGSKESFTLFD ADPR_RHOER 120 26 CLPPROTEASEA3 Length of motif = 19 Motif number = 3 CLPA protease motif III - 2 PCODE ST INT LFDEIEKAHPDVFNVMLQI O87444 692 10 LLDEIEKAHPDVFNILLQV O68185 678 10 LFDEIEKAHGDVFNVMLQI CLPB_SYNY3 681 10 LLDEIEKAHPDVFNMLLQV Q48760 619 10 LFDEIEKAHPDVFNVMLQI CLPB_SYNP7 690 10 LFDEIEKAHPDVFNIFLQI O67325 608 10 LLDEVEKAHPDVFNILLQV CLPB_ECOLI 675 10 LFDEVEKAHTSVFNTLLQV Q39889 676 10 LFDEIEKAHPDVFDVLLQV O53719 677 10 LLDEIEKAHPDVFNILLQV MECB_BACSU 615 10 LFDEIEKAHPDIFNMLLQI Q55662 615 10 LFDEVEKAHVAVFNTLLQV H101_ARATH 676 10 LLDEIEKAHPDVFNLLLQL Q55023 632 10 LFDEIEKAHPDVFNMMLQI CLAB_LYCES 713 10 LFDEIEKAHPDVFNMMLQI CLPA_PEA 713 10 LFDEIEKAHPDIFNLLLQI CLPC_PORPU 619 10 LLDEVEKAHADVFNILLQV CLPB_HAEIN 675 10 LLDEVEKAHLDVFNILLQV P74459 690 10 LLDEIEKAHPRVLDLFLQV O67588 796 10 LLDEVEKAHPNVFNVLLQV Q25317 675 10 LFDEIEKAHPDVFNMMLQI CLAA_LYCES 716 10 LFDEVEKAHPDVFDILLQV CLPB_CORGL 678 10 LFDEVEKAHQDVFNIFLQI O83110 679 10 LFDEIEKGHPDVFNLLLQI CLPC_GUITH 616 10 LLDEVEKAHPDVFNLLLQV CLPB_HELPY 675 10 LFDEIEKAHPDVFNILLQL O81723 670 10 LFDEIEKAHPDVFNMMLQI O48931 714 10 LLDEVEKAHPDVFNILLQV O69936 643 10 LFDEVEKAHPDVFNLLLQV O34209 687 10 LFDEIEKAHPDVTNILLQV HLYB_TREHY 624 10 LFDEIEKAHPDVTNILLQV CLPB_MYCPN 536 10 LFDEVEKAHSDVFNTLLQV CLPB_BACNO 680 10 LFDEVEKAHPNVYNVLLQV CLP_TRYBB 673 10 LLDEVEKAHPDVFNLLLQI CLPC_ODOSI 630 10 LLDEVEKAHPNVFNVLLQV O00828 675 10 LFDEIEKAHPDVTNVLLQV CLPB_MYCGE 536 10 LLDEIEKAHPDVFNVLLQV O83560 612 10 LFDEIEKAHPDIFNILLQL ERD1_ARATH 734 10 LFDEFEKAHPDVSKLLLQV Q12137 611 10 LFDEIEKAHQEIYNSLLQV O06286 623 10 LFDEIEKAHPDVYNLLLRV Q25646 724 10 LLDEIEKAHPDVYNILLQV CLPA_RHOBL 592 10 LLDEIEKAHPDIFNVLLQV O83779 607 10 LFDEFEKAHPDVSKLLLQV HSP7_YEAST 611 10 LFDEIEKADKEVFNILLQI O84115 675 10 LFDELEKAHHDITNLLLQV O74402 609 10 LFDEIEKAHPDIMDLMLQI O84288 641 10 LFDEVEKAHKDVFNVLLGI O69287 678 10 LLDEIEKAHPDVQHMFLQI O31673 516 10 LFDEVEKTHVTVFNTLLQH O23323 642 11 LLDEIEKAHPDVFNILLQV CLPA_ECOLI 562 10 LFDEIEKAHPDIYNIMLQI Q25823 567 10 LLDEIEKAHSNVYDLLLQV O24875 550 10 LFDEIEKAHPKIMDIFLQI O26384 399 10 LLDEIEKADPQVLTLLLQV CLPL_LACLA 582 11 LFDEVEKAHPDVLTVMLQM H104_YEAST 684 10 LFDEVDKAHPDVLTIMLQL SKD3_MOUSE 422 10 LFDELEKASPEVVHALLNV AMIB_PSEAE 170 14 LFDEVEKADPTVLRALLQV ADPR_RHOER 153 14 CLPPROTEASEA4 Length of motif = 15 Motif number = 4 CLPA protease motif IV - 2 PCODE ST INT DFKNTIIIMTSNIGS O87444 725 14 DFKNTVLIMTSNVGS O68185 711 14 DFKNTIIIMTSNLGS CLPB_SYNY3 714 14 DFRNTVIIMTSNIGA Q48760 652 14 DFKNTILILTSNIGS CLPB_SYNP7 723 14 DFSNTIIIMTSNLGA O67325 641 14 DFRNTVVIMTSNLGS CLPB_ECOLI 708 14 DFRNTVIIMTSNLGA Q39889 709 14 DFRNTILILTSNLGS O53719 710 14 DFRNTILIMTSNVGA MECB_BACSU 648 14 DFKNTLLIMTSNIGS Q55662 648 14 DFRNSVIIMTSNLGA H101_ARATH 709 14 DFKNTLIILTSNIGS Q55023 665 14 DFKNTLLIMTSNVGS CLAB_LYCES 746 14 DFKNTLLIMTSNVGS CLPA_PEA 746 14 DFKNTLLIMTSNIGS CLPC_PORPU 652 14 DFRNTVVIMTSNLGS CLPB_HAEIN 708 14 DFRNTIIVMTSNIGS P74459 723 14 DFRNTVIIMTSNIGS O67588 829 14 DFCNTIIIMTSNLGA Q25317 708 14 DFKNTLLIMTSNVGS CLAA_LYCES 749 14 DFRNTILILTSNLGA CLPB_CORGL 711 14 DFRNTIIIMTSNIGS O83110 712 14 DFKNTLLILTSNVGS CLPC_GUITH 649 14 DFKNTILILTSNVAS CLPB_HELPY 708 14 SFKNCVVIMTSNIGS O81723 703 14 DFKNTLLIMTSNVGS O48931 747 14 DFSNTVVVMTSNLGS O69936 676 14 DFCNAVIVMTSNIGS O34209 720 14 DFSNTIIIITSNLGA HLYB_TREHY 657 14 NFKNTMIIMTSNLGS CLPB_MYCPN 569 14 DFRHTVIIMTSNLGS CLPB_BACNO 713 14 DFSNTIIVMTSNLGS CLP_TRYBB 706 14 DFRNTMIIMTTNLGA CLPC_ODOSI 663 14 NFCYTIIIMTSNLGA O00828 708 14 NFKNTLIIMTSNLGS CLPB_MYCGE 569 14 NFRNTIIIMTSNAGT O83560 645 14 SFKNALIIMTSNVGS ERD1_ARATH 767 14 DFRNTIIVMTSNIGQ Q12137 644 14 DFKNTVLIFTSNLGT O06286 656 14 NFRNTIIIFTSNLGS Q25646 757 14 DFRNVILIMTSNVGA CLPA_RHOBL 625 14 DFRNVILIMTSNAGA O83779 640 14 DFRNTIIVMTSNIGQ HSP7_YEAST 644 14 NCKNALFIMTSNIGS O84115 708 14 DFRSTLIVMTSNLGS O74402 642 14 DFRNTIIIMTSNLGA O84288 674 14 DFKNTIIILTSNIAS O69287 711 14 SFKDTVIIMTSNAGA O31673 549 14 DFKNTVIIMTSNLGA O23323 665 4 DFRNVVLVMTTNAGV CLPA_ECOLI 595 14 DFTHTIILLTSNLGC Q25823 600 14 SFKHVILIMTSNVGS O24875 583 14 FFTESVIIFTSNIGT O26384 432 14 DFRNTIIIMTSNAGF CLPL_LACLA 615 14 DCSNCIVIMTSNLGA H104_YEAST 717 14 DCKDAIFIMTSNVAS SKD3_MOUSE 455 14 HFRNTLVFMTSNLCA AMIB_PSEAE 204 15 SFRNSYVFLTSNLGS ADPR_RHOER 187 15

User query: Display/Full Code "CLPPROTEASEA"