WORKLIST ENTRIES (1):
CLPPROTEASEA View alignment View Structure ATP-dependent Clp protease ATP-binding subunit signature
Type of fingerprint: COMPOUND with 4 elements
Links:
INTERPRO; IPR001270
PROSITE; PS00870 CLPAB_1; PS00871 CLPAB_2
PFAM; PF00495 clpA_B
Creation date 11-NOV-1994; UPDATE 27-JUN-1999
1. GOTTESMAN, S., SQUIRES, C., PICHERSKY, E., CARRINGTON, M., HOBBS, M.,
MATTICK, J.S., DALRYMPLE, B., KURAMITSU, H., SHIROZA, T., FOSTER, T.,
CLARK, W.P., ROSS, B., SQUIRES, C.L. AND MAURIZI, M.R.
Conservation of the regulatory subunit for the CLP ATP-dependent protease
in prokaryotes and eukaryotes.
PROC.NATL.ACAD.SCI.U.S.A. 87 3513-3517 (1990).
2. PARSELL, D.A., SANCHEZ, Y., STITZEL, J.D. AND LINDQUIST, S.
HSP104 is a highly conserved protein with 2 essential nucleotide-
binding sites.
NATURE 353 270-273 (1991).
An evolutionary relationship has been demonstrated in a group of ATP-
binding proteins that includes the regulatory subunit of the ATP-dependent
protease clpA; heat shock proteins clpB, 104 and 78; and chloroplast
proteins CD4a and CD4b [1,2]. The proteins are thought to protect cells
from stress by controlling the aggregation and denaturation of vital
cellular structures. They vary in size, but share 2 conserved 200-amino
acid domains, each of which contains an ATP-binding site.
CLPPROTEASEA is a 4-element fingerprint that provides a signature for ATP-
dependent CLP protease ATP-binding subunits. The fingerprint was derived
from an initial alignment of 4 sequences: the motifs were drawn from
the second domain, in the region of the ATP-binding site (cf. PROSITE
patterns CLPAB_1 (PS00870) and CLPAB_2 (PS00871)). Two iterations on
OWL24.0 were required to reach convergence, at which point a true set
comprising 18 sequences was identified. Amongst the partial matches was
the hypothetical protein of the putative ATP operon from Mycobacterium
leprae, which is a fragment lacking the last motif; and strong matches
with motif 1 were also made by a transmembrane ATPase from L.lactis, and
DNA polymerase III, which contains an ATP-binding site.
An update on SPTR37_9f identified a true set of 59 sequences, and 1
partial match.
SUMMARY INFORMATION
59 codes involving 4 elements
1 codes involving 3 elements
0 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
4| 59 59 59 59
3| 0 1 1 1
2| 0 0 0 0
--+---------------------
| 1 2 3 4
True positives..
O87444 O68185 CLPB_SYNY3 Q48760
CLPB_SYNP7 O67325 CLPB_ECOLI Q39889
O53719 MECB_BACSU Q55662 H101_ARATH
Q55023 CLAB_LYCES CLPA_PEA CLPC_PORPU
CLPB_HAEIN P74459 O67588 Q25317
CLAA_LYCES CLPB_CORGL O83110 CLPC_GUITH
CLPB_HELPY O81723 O48931 O69936
O34209 HLYB_TREHY CLPB_MYCPN CLPB_BACNO
CLP_TRYBB CLPC_ODOSI O00828 CLPB_MYCGE
O83560 ERD1_ARATH Q12137 O06286
Q25646 CLPA_RHOBL O83779 HSP7_YEAST
O84115 O74402 O84288 O69287
O31673 O23323 CLPA_ECOLI Q25823
O24875 O26384 CLPL_LACLA H104_YEAST
SKD3_MOUSE AMIB_PSEAE ADPR_RHOER
Subfamily: Codes involving 3 elements
Subfamily True positives..
O51774
PROTEIN TITLES
O87444 HEAT SHOCK PROTEIN - PLECTONEMA BORYANUM.
O68185 CLPB CHAPERONE HOMOLOG - LACTOCOCCUS LACTIS (SUBSP. CREMORIS
CLPB_SYNY3 CLPB PROTEIN - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
Q48760 CLPC ATPASE - LISTERIA MONOCYTOGENES.
CLPB_SYNP7 CLPB PROTEIN - SYNECHOCOCCUS SP. (STRAIN PCC 7942) (ANACYSTI
O67325 ATP-DEPENDENT CLP PROTEASE - AQUIFEX AEOLICUS.
CLPB_ECOLI CLPB PROTEIN (HEAT SHOCK PROTEIN F84.1) - ESCHERICHIA COLI.
Q39889 HEAT SHOCK PROTEIN - GLYCINE MAX (SOYBEAN).
O53719 CLPB HEAT SHOCK PROTEIN - MYCOBACTERIUM TUBERCULOSIS.
MECB_BACSU NEGATIVE REGULATOR OF GENETIC COMPETENCE MECB - BACILLUS SUB
Q55662 ATP-DEPENDENT CLP PROTEASE REGULATORY SUBUNIT - SYNECHOCYSTI
H101_ARATH HEAT SHOCK PROTEIN 101 - ARABIDOPSIS THALIANA (MOUSE-EAR CRE
Q55023 CLPC - SYNECHOCOCCUS SP.
CLAB_LYCES ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG
CLPA_PEA ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG
CLPC_PORPU ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG
CLPB_HAEIN CLPB PROTEIN - HAEMOPHILUS INFLUENZAE.
P74459 CLPB PROTEIN - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
O67588 ATPASE SUBUNIT OF ATP-DEPENDENT PROTEASE - AQUIFEX AEOLICUS.
Q25317 100 KDA HEAT SHOCK PROTEIN (HSP100) - LEISHMANIA MAJOR.
CLAA_LYCES ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG
CLPB_CORGL CLPB PROTEIN - CORYNEBACTERIUM GLUTAMICUM (BREVIBACTERIUM FL
O83110 ATP-DEPENDENT CLP PROTEASE SUBUNIT B (CLPB) - TREPONEMA PALL
CLPC_GUITH ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG
CLPB_HELPY CLPB PROTEIN - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
O81723 ATP-DEPENDENT CLP PROTEINASE - LIKE PROTEIN - ARABIDOPSIS TH
O48931 CLPC - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O69936 CLP PROTEASE ATP BINDING SUBUNIT - STREPTOMYCES COELICOLOR.
O34209 CLPB/HSP100 - SYNECHOCOCCUS SP. (STRAIN PCC 7942) (ANACYSTIS
HLYB_TREHY HEMOLYSIN B - TREPONEMA HYODYSENTERIAE (SERPULINA HYODYSENTE
CLPB_MYCPN CLPB PROTEIN - MYCOPLASMA PNEUMONIAE.
CLPB_BACNO CLPB PROTEIN - BACTEROIDES NODOSUS (DICHELOBACTER NODOSUS).
CLP_TRYBB HEAT SHOCK PROTEIN 100 (CLP PROTEIN) - TRYPANOSOMA BRUCEI BR
CLPC_ODOSI ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG
O00828 HEAT SHOCK PROTEIN 100 - LEISHMANIA DONOVANI.
CLPB_MYCGE CLPB PROTEIN - MYCOPLASMA GENITALIUM.
O83560 ATPASE (CLPC) - TREPONEMA PALLIDUM.
ERD1_ARATH ERD1 PROTEIN PRECURSOR - ARABIDOPSIS THALIANA (MOUSE-EAR CRE
Q12137 HSP78P - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
O06286 CLPC - MYCOBACTERIUM TUBERCULOSIS.
Q25646 CLPB - PLASMODIUM BERGHEI.
CLPA_RHOBL CLPA HOMOLOG PROTEIN - RHODOPSEUDOMONAS BLASTICA.
O83779 ATP-DEPENDENT CLP PROTEASE SUBUNIT A (CLPA) - TREPONEMA PALL
HSP7_YEAST MITOCHONDRIAL HEAT SHOCK PROTEIN 78 PRECURSOR - SACCHAROMYCE
O84115 CLP PROTEASE ATPASE - CHLAMYDIA TRACHOMATIS.
O74402 CHAPERONIN HSP78P - SCHIZOSACCHAROMYCES POMBE (FISSION YEAST
O84288 CLPC PROTEASE ATPASE - CHLAMYDIA TRACHOMATIS.
O69287 HEAT SHOCK PROTEIN - CAMPYLOBACTER JEJUNI.
O31673 ATP-DEPENDENT CLP PROTEASE-LIKE - BACILLUS SUBTILIS.
O23323 HEAT SHOCK PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
CLPA_ECOLI ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA - ESCHER
Q25823 COMPLETE GENE MAP OF PLASTID-LIKE DNA (IR-B) - PLASMODIUM FA
O24875 ATP-DEPENDENT C1P PROTEASE (CLPA) - HELICOBACTER PYLORI (CAM
O26384 ATP-DEPENDENT CLP PROTEASE REGULATORY SUBUNIT - METHANOBACTE
CLPL_LACLA ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT CLPL - LACTOCOCCU
H104_YEAST HEAT SHOCK PROTEIN 104 - SACCHAROMYCES CEREVISIAE (BAKER'S Y
SKD3_MOUSE SKD3 PROTEIN - MUS MUSCULUS (MOUSE).
AMIB_PSEAE ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT-LIKE PROTEIN AMIB
ADPR_RHOER ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT-LIKE PROTEIN - RH
O51774 ATP-DEPENDENT CLP PROTEASE, SUBUNIT C (CLPC) - BORRELIA BURG
SCAN HISTORY
OWL24_0 2 100 NSINGLE
SPTR37_9f 2 90 NSINGLE
INITIAL MOTIF SETS
CLPPROTEASEA1 Length of motif = 19 Motif number = 1
CLPA protease motif I - 1
PCODE ST INT
FLFLGPTGVGKTELCKALA CLPB_ECOLI 601 601
FLFLGPTGVGKTELCRTLA CLPB_BACNO 606 606
YLFTGPTGVGKTEVAKQLA CLPA_RHOBL 521 521
FLFAGPTGVGKTEVTVQLS CLPA_ECOLI 491 491
CLPPROTEASEA2 Length of motif = 19 Motif number = 2
CLPA protease motif II - 1
PCODE ST INT
LVGAPPGYVGYEEGGYLTE CLPB_ECOLI 646 26
LIGAPPGYVGYDQGGYLTE CLPB_BACNO 651 26
LIGAPPGYVGFDQGGMLTD CLPA_RHOBL 563 23
VIGAPPGYVGFDQGGLLTD CLPA_ECOLI 533 23
CLPPROTEASEA3 Length of motif = 19 Motif number = 3
CLPA protease motif III - 1
PCODE ST INT
LLDEVEKAHPDVFNILLQV CLPB_ECOLI 675 10
LFDEVEKAHSDVFNTLLQV CLPB_BACNO 680 10
LLDEIEKAHPDVYNILLQV CLPA_RHOBL 592 10
LLDEIEKAHPDVFNILLQV CLPA_ECOLI 562 10
CLPPROTEASEA4 Length of motif = 15 Motif number = 4
CLPA protease motif IV - 1
PCODE ST INT
DFRNTVVIMTSNLGS CLPB_ECOLI 708 14
DFRHTVIIMTSNLGS CLPB_BACNO 713 14
DFRNVILIMTSNVGA CLPA_RHOBL 625 14
DFRNVVLVMTTNAGV CLPA_ECOLI 595 14
FINAL MOTIF SETS
CLPPROTEASEA1 Length of motif = 19 Motif number = 1
CLPA protease motif I - 2
PCODE ST INT
FIFLGPTGVGKTELAKALA O87444 618 618
FLFLGPTGVGKTELAKALA O68185 604 604
FIFLGPTGVGKTELAKALA CLPB_SYNY3 607 607
FIFLGPTGVGKTELARALA Q48760 545 545
FIFLGPTGVGKTELAKALA CLPB_SYNP7 616 616
FMFLGPTGVGKTETAKALA O67325 534 534
FLFLGPTGVGKTELCKALA CLPB_ECOLI 601 601
FLFLGPTGVGKTELAKALA Q39889 602 602
FMFLGPTGVGKTELAKALA O53719 603 603
FIFLGPTGVGKTELARALA MECB_BACSU 541 541
FIFSGPTGVGKTELTKALA Q55662 541 541
FLFLGPTGVGKTELAKALA H101_ARATH 602 602
FIFSGPTGVGKTELTKALA Q55023 558 558
FIFSGPTGVGKSELAKALA CLAB_LYCES 639 639
FIFSGPTGVGKSELAKALA CLPA_PEA 639 639
FIFSGPTGVGKTELTKALA CLPC_PORPU 545 545
FLFLGPTGVGKTELCKTLA CLPB_HAEIN 601 601
FLFMGPTGVGKTELARALA P74459 616 616
FLFLGPTGVGKTELSKALA O67588 722 722
FLFLGPTGVGKTELSKAVA Q25317 601 601
FIFSGPTGVGKSELAKSLA CLAA_LYCES 642 642
FLFLGPTGVGKTELAKAVA CLPB_CORGL 604 604
FLCVGPTGVGKTELARTLA O83110 605 605
FIFSGPTGVGKTELTKALA CLPC_GUITH 542 542
FLFLGPTGVGKTESAKALA CLPB_HELPY 601 601
FMFMGPTGVGKTELAKALA O81723 596 596
FIFSGPTGVGKSELAKALA O48931 640 640
FLFLGPTGVGKTELARALA O69936 569 569
FLFLGPTGVGKTELARALA O34209 613 613
FIFLGPTGVGKTALAKVLS HLYB_TREHY 550 550
FIFLGSTGVGKTELAKSLA CLPB_MYCPN 462 462
FLFLGPTGVGKTELCRTLA CLPB_BACNO 606 606
FLFLGPTGVGKTELVKAVA CLP_TRYBB 599 599
FIFAGPTGVGKTELTKALS CLPC_ODOSI 556 556
FLFLGPTGVGKTELSKAVA O00828 601 601
FIFLGSTGVGKTELAKSLA CLPB_MYCGE 462 462
FLFLGPTGVGKTLLAKTLA O83560 538 538
MLFCGPTGVGKTELTKALA ERD1_ARATH 660 660
FMFLGPTGTGKTELTKALA Q12137 537 537
FIFAGPSGVGKTELSKALA O06286 549 549
LMFLGPTGVGKTELSKVLA Q25646 650 650
YLFTGPTGVGKTEVAKQLA CLPA_RHOBL 521 521
LLFVGATGVGKTELARTLA O83779 536 536
FMFLGPTGTGKTKLTKALA HSP7_YEAST 537 537
FLFLGPTGVGKTELAKALA O84115 601 601
FLFLGPTGVGKTALTKALA O74402 535 535
FLFLGPTGVGKTLLAQQIA O84288 567 567
LLFLGPTGVGKTQSAKALA O69287 604 604
FLFVGPTGVGKTELSKTLA O31673 442 442
FLFLGPTGVGKTELAKALA O23323 567 567
FLFAGPTGVGKTEVTVQLS CLPA_ECOLI 491 491
WILCGPSGTGKTELAKILS Q25823 493 493
FLFVGPSGVGKTELAKELA O24875 479 479
FFFAGPTGVGKTFLAKKLA O26384 325 325
FLFVGPTGVGKTELSQALA CLPL_LACLA 507 507
FLFLGLSGSGKTELAKKVA H104_YEAST 610 610
FLFLGSSGIGKTELAKQTA SKD3_MOUSE 347 347
ALFLGPTGVGKTEIVRALA AMIB_PSEAE 92 92
ILLVGPTGVGKTELVRRVA ADPR_RHOER 75 75
CLPPROTEASEA2 Length of motif = 19 Motif number = 2
CLPA protease motif II - 2
PCODE ST INT
LIGAPPGYVGYEEGGQLTE O87444 663 26
LVGAPPGYVGYDEGGQLTE O68185 649 26
LMGAPPGYVGYEEGGQLTE CLPB_SYNY3 652 26
LVGAPPGYVGYEEGGQLTE Q48760 590 26
LIGAPPGYVGYDEGGQLTE CLPB_SYNP7 661 26
LIGAPPGYVGYEEGGQLTE O67325 579 26
LVGAPPGYVGYEEGGYLTE CLPB_ECOLI 646 26
LIGAPPGYVGHEEGGQLTE Q39889 647 26
LIGAPPGYVGYEAGGQLTE O53719 648 26
LVGSPPGYVGYDEGGQLTE MECB_BACSU 586 26
LIGSPPGYVGYNEGGQLTE Q55662 586 26
LIGAPPGYVGHEEGGQLTE H101_ARATH 647 26
LIGSPPGYVGYNEGGQLTE Q55023 603 26
LIGSPPGYVGYTEGGQLTE CLAB_LYCES 684 26
LIGSPPGYVGYTEGGQLTE CLPA_PEA 684 26
LIGSPPGYVGYSEGGYLTE CLPC_PORPU 590 26
LVGAPPGYVGYEEGGYLTE CLPB_HAEIN 646 26
LIGAPPGYVGYEEGGQLSE P74459 661 26
LIGAPPGYVGYEEGGKLTE O67588 767 26
LIGTPPGYVGHEEGGQLTE Q25317 646 26
LIGSPPGYVGYTEGGQLTE CLAA_LYCES 687 26
LVGAPPGYVGYDQGGQLTE CLPB_CORGL 649 26
LIGAPPGYVGYDEGGQLTE O83110 650 26
LIGSPPGYVGYNEGGQLTE CLPC_GUITH 587 26
LIGAAPGYVGYEEGGQLTE CLPB_HELPY 646 26
LVGAPPGYVGYEEGGQLTE O81723 641 26
LIGSLPGYVGYTEGGQLTE O48931 685 26
LVGAPPGYVGHEEAGQLTE O69936 614 26
LIGAPPGYIGYEEGGQLSE O34209 658 26
LIGAPPGYVGYEEGGGLTE HLYB_TREHY 595 26
LIGAPPGYVGYEQSGLLTE CLPB_MYCPN 507 26
LIGAPPGYVGYDQGGYLTE CLPB_BACNO 651 26
LIGAPPGYIGHDEGGQLTE CLP_TRYBB 644 26
LIGSPPGYVGYNEGGQLTE CLPC_ODOSI 601 26
LIGAPPGYVGHEEGGQLTE O00828 646 26
LIGAPPGYIGYEQSGLLTE CLPB_MYCGE 507 26
LMGAPPGYVGFENGGLLTE O83560 583 26
LIGSPPGYVGFEEGGMLTE ERD1_ARATH 705 26
LIGAPPGYVLSESGGQLTE Q12137 582 26
LFGAPPGYVGYEEGGQLTE O06286 594 26
LIGAAPGYVGYEQGGLLTD Q25646 695 26
LIGAPPGYVGFDQGGMLTD CLPA_RHOBL 563 23
LIGSPPGYVGFEEGGLLTD O83779 578 23
LIGAPPGYVLSESGGQLTE HSP7_YEAST 582 26
LIGSPPGYVGYEEGGSLSE O84115 646 26
LIGSPPGYIGYEESGELTE O74402 580 26
MMGSPPGYVGHEEGGHLTE O84288 612 26
LLGAPPGYIGHEEGGELTE O69287 649 26
IIGSPPGYVGHEEAGQLTE O31673 487 26
LIGAPPGYYIGHEEGGQLT O23323 612 26
LIGAPPGYVGFDQGGLLTD CLPA_ECOLI 533 23
LIGSPPGYVGYSEGGQLTE Q25823 538 26
LIGSPSGYVGFEQGGLLVN O24875 521 23
LIGSPPGYVGYEQGGQLTN O26384 370 26
LIGTSAGYVGYEDNANTLT CLPL_LACLA 552 26
LLGTTAGYVGYDEGGFLTN H104_YEAST 655 26
FIGSPPGYIGHEEGGQLTK SKD3_MOUSE 393 27
LTGAPPGYVGAKEGTTLLE AMIB_PSEAE 137 26
FSGAPPGYAGSKESFTLFD ADPR_RHOER 120 26
CLPPROTEASEA3 Length of motif = 19 Motif number = 3
CLPA protease motif III - 2
PCODE ST INT
LFDEIEKAHPDVFNVMLQI O87444 692 10
LLDEIEKAHPDVFNILLQV O68185 678 10
LFDEIEKAHGDVFNVMLQI CLPB_SYNY3 681 10
LLDEIEKAHPDVFNMLLQV Q48760 619 10
LFDEIEKAHPDVFNVMLQI CLPB_SYNP7 690 10
LFDEIEKAHPDVFNIFLQI O67325 608 10
LLDEVEKAHPDVFNILLQV CLPB_ECOLI 675 10
LFDEVEKAHTSVFNTLLQV Q39889 676 10
LFDEIEKAHPDVFDVLLQV O53719 677 10
LLDEIEKAHPDVFNILLQV MECB_BACSU 615 10
LFDEIEKAHPDIFNMLLQI Q55662 615 10
LFDEVEKAHVAVFNTLLQV H101_ARATH 676 10
LLDEIEKAHPDVFNLLLQL Q55023 632 10
LFDEIEKAHPDVFNMMLQI CLAB_LYCES 713 10
LFDEIEKAHPDVFNMMLQI CLPA_PEA 713 10
LFDEIEKAHPDIFNLLLQI CLPC_PORPU 619 10
LLDEVEKAHADVFNILLQV CLPB_HAEIN 675 10
LLDEVEKAHLDVFNILLQV P74459 690 10
LLDEIEKAHPRVLDLFLQV O67588 796 10
LLDEVEKAHPNVFNVLLQV Q25317 675 10
LFDEIEKAHPDVFNMMLQI CLAA_LYCES 716 10
LFDEVEKAHPDVFDILLQV CLPB_CORGL 678 10
LFDEVEKAHQDVFNIFLQI O83110 679 10
LFDEIEKGHPDVFNLLLQI CLPC_GUITH 616 10
LLDEVEKAHPDVFNLLLQV CLPB_HELPY 675 10
LFDEIEKAHPDVFNILLQL O81723 670 10
LFDEIEKAHPDVFNMMLQI O48931 714 10
LLDEVEKAHPDVFNILLQV O69936 643 10
LFDEVEKAHPDVFNLLLQV O34209 687 10
LFDEIEKAHPDVTNILLQV HLYB_TREHY 624 10
LFDEIEKAHPDVTNILLQV CLPB_MYCPN 536 10
LFDEVEKAHSDVFNTLLQV CLPB_BACNO 680 10
LFDEVEKAHPNVYNVLLQV CLP_TRYBB 673 10
LLDEVEKAHPDVFNLLLQI CLPC_ODOSI 630 10
LLDEVEKAHPNVFNVLLQV O00828 675 10
LFDEIEKAHPDVTNVLLQV CLPB_MYCGE 536 10
LLDEIEKAHPDVFNVLLQV O83560 612 10
LFDEIEKAHPDIFNILLQL ERD1_ARATH 734 10
LFDEFEKAHPDVSKLLLQV Q12137 611 10
LFDEIEKAHQEIYNSLLQV O06286 623 10
LFDEIEKAHPDVYNLLLRV Q25646 724 10
LLDEIEKAHPDVYNILLQV CLPA_RHOBL 592 10
LLDEIEKAHPDIFNVLLQV O83779 607 10
LFDEFEKAHPDVSKLLLQV HSP7_YEAST 611 10
LFDEIEKADKEVFNILLQI O84115 675 10
LFDELEKAHHDITNLLLQV O74402 609 10
LFDEIEKAHPDIMDLMLQI O84288 641 10
LFDEVEKAHKDVFNVLLGI O69287 678 10
LLDEIEKAHPDVQHMFLQI O31673 516 10
LFDEVEKTHVTVFNTLLQH O23323 642 11
LLDEIEKAHPDVFNILLQV CLPA_ECOLI 562 10
LFDEIEKAHPDIYNIMLQI Q25823 567 10
LLDEIEKAHSNVYDLLLQV O24875 550 10
LFDEIEKAHPKIMDIFLQI O26384 399 10
LLDEIEKADPQVLTLLLQV CLPL_LACLA 582 11
LFDEVEKAHPDVLTVMLQM H104_YEAST 684 10
LFDEVDKAHPDVLTIMLQL SKD3_MOUSE 422 10
LFDELEKASPEVVHALLNV AMIB_PSEAE 170 14
LFDEVEKADPTVLRALLQV ADPR_RHOER 153 14
CLPPROTEASEA4 Length of motif = 15 Motif number = 4
CLPA protease motif IV - 2
PCODE ST INT
DFKNTIIIMTSNIGS O87444 725 14
DFKNTVLIMTSNVGS O68185 711 14
DFKNTIIIMTSNLGS CLPB_SYNY3 714 14
DFRNTVIIMTSNIGA Q48760 652 14
DFKNTILILTSNIGS CLPB_SYNP7 723 14
DFSNTIIIMTSNLGA O67325 641 14
DFRNTVVIMTSNLGS CLPB_ECOLI 708 14
DFRNTVIIMTSNLGA Q39889 709 14
DFRNTILILTSNLGS O53719 710 14
DFRNTILIMTSNVGA MECB_BACSU 648 14
DFKNTLLIMTSNIGS Q55662 648 14
DFRNSVIIMTSNLGA H101_ARATH 709 14
DFKNTLIILTSNIGS Q55023 665 14
DFKNTLLIMTSNVGS CLAB_LYCES 746 14
DFKNTLLIMTSNVGS CLPA_PEA 746 14
DFKNTLLIMTSNIGS CLPC_PORPU 652 14
DFRNTVVIMTSNLGS CLPB_HAEIN 708 14
DFRNTIIVMTSNIGS P74459 723 14
DFRNTVIIMTSNIGS O67588 829 14
DFCNTIIIMTSNLGA Q25317 708 14
DFKNTLLIMTSNVGS CLAA_LYCES 749 14
DFRNTILILTSNLGA CLPB_CORGL 711 14
DFRNTIIIMTSNIGS O83110 712 14
DFKNTLLILTSNVGS CLPC_GUITH 649 14
DFKNTILILTSNVAS CLPB_HELPY 708 14
SFKNCVVIMTSNIGS O81723 703 14
DFKNTLLIMTSNVGS O48931 747 14
DFSNTVVVMTSNLGS O69936 676 14
DFCNAVIVMTSNIGS O34209 720 14
DFSNTIIIITSNLGA HLYB_TREHY 657 14
NFKNTMIIMTSNLGS CLPB_MYCPN 569 14
DFRHTVIIMTSNLGS CLPB_BACNO 713 14
DFSNTIIVMTSNLGS CLP_TRYBB 706 14
DFRNTMIIMTTNLGA CLPC_ODOSI 663 14
NFCYTIIIMTSNLGA O00828 708 14
NFKNTLIIMTSNLGS CLPB_MYCGE 569 14
NFRNTIIIMTSNAGT O83560 645 14
SFKNALIIMTSNVGS ERD1_ARATH 767 14
DFRNTIIVMTSNIGQ Q12137 644 14
DFKNTVLIFTSNLGT O06286 656 14
NFRNTIIIFTSNLGS Q25646 757 14
DFRNVILIMTSNVGA CLPA_RHOBL 625 14
DFRNVILIMTSNAGA O83779 640 14
DFRNTIIVMTSNIGQ HSP7_YEAST 644 14
NCKNALFIMTSNIGS O84115 708 14
DFRSTLIVMTSNLGS O74402 642 14
DFRNTIIIMTSNLGA O84288 674 14
DFKNTIIILTSNIAS O69287 711 14
SFKDTVIIMTSNAGA O31673 549 14
DFKNTVIIMTSNLGA O23323 665 4
DFRNVVLVMTTNAGV CLPA_ECOLI 595 14
DFTHTIILLTSNLGC Q25823 600 14
SFKHVILIMTSNVGS O24875 583 14
FFTESVIIFTSNIGT O26384 432 14
DFRNTIIIMTSNAGF CLPL_LACLA 615 14
DCSNCIVIMTSNLGA H104_YEAST 717 14
DCKDAIFIMTSNVAS SKD3_MOUSE 455 14
HFRNTLVFMTSNLCA AMIB_PSEAE 204 15
SFRNSYVFLTSNLGS ADPR_RHOER 187 15
User query: Display/Full Code "CLPPROTEASEA"