WORKLIST ENTRIES (1):
DNAPOLI View alignment View Structure DNA-polymerase family A (pol I) signature
Type of fingerprint: COMPOUND with 9 elements
Links:
PRINTS; PR00106 DNAPOLB; PR00867 DNAPOLG; PR00869 DNAPOLX
PRINTS; PR00870 DNAPOLXBETA; PR00871 DNAPOLXTDT; PR00866 RNADNAPOLMS
INTERPRO; IPR002298
PROSITE; PS00447 DNA_POLYMERASE_A
PFAM; PF00476 DNA_pol_A
PDB; 1KFS 3Dinfo; 1KRP 3Dinfo
SCOP; 1KFS; 1KRP
CATH; 1KFS; 1KRP
Creation date 29-JUN-1998; UPDATE 10-JUN-1999
1. JUNG, G., LEAVITT, M.C., HSIEH, J-C. AND ITO, J.
Bacteriophage PRD1 DNA polymerase: Evolution of DNA polymerases.
PROC.NATL.ACAD.SCI.U.S.A. 84 8287-8291 (1987).
2. DELARUE, M., POCH, O., TORDO, N., MORAS, D. AND ARGOS, P.
An attempt to unify the structure of polymerases.
PROTEIN ENG. 3(6) 461-467 (1990).
DNA carries the biological information that instructs cells how to exist
in an ordered fashion: accurate replication is thus one of the most
important events in the cell life cycle. This function is mediated by
DNA-directed DNA-polymerases, which add nucleotide triphosphate (dNTP)
residues to the 5'-end of the growing DNA chain, using a complementary
DNA as template. Small RNA molecules are generally used as primers for
chain elongation, although terminal proteins may also be used.
DNA-dependent DNA-polymerases have been grouped into families, denoted A, B
and X, on the basis of sequence similarities [1,2]. Members of family A,
which includes bacterial and bacteriophage polymerases, share significant
similarity to E.coli polymerase I; hence family A is also known as the pol I
family. The bacterial polymerases also contain an exonuclease activity,
which is coded for in the N-terminal portion.
Three motifs, A, B and C, as defined by Delarue et al. [2], are seen to be
conserved across all DNA-polymerases, with motifs A and C also seen in RNA-
polymerases. They are centered on invariant residues, and their structural
significance was implied from the Klenlow (E.coli) structure: motif A
contains a strictly-conserved aspartate at the junction of a beta-strand
and an alpha-helix; motif B contains an alpha-helix with positive charges;
and motif C has a doublet of negative charges, located in a beta-turn-beta
secondary structure [2].
DNAPOLI is a 9-element fingerprint that provides a signature for the DNA-
polymerase A family. The fingerprint was derived from an initial alignment
of 14 sequences: the motifs were drawn from conserved regions in the
C-terminal portion of the alignment - motif 1 spans strands 7 and 8, and
helix 16, and contains a conserved Arg, which binds a metal ion; motif 2
straddles helix 17; motif 3 spans strand 9 and helix 19; motif 4 encompasses
"motif A", which contains one of the active site Asps; motif 5 spans the
region encoded by PROSITE pattern DNA_POLYMERASE_A (PS00447), corresponding
to "motif B", which contains the strictly conserved active site Lys and the
conserved Tyr residue; motif 6 spans the C-terminal section of helix 24 and
the start of helix 25; motif 7 straddles strands 10 and 11; motif 8 spans
the central portion of helix 26; and motif 9 includes "motif C", which
contains an active site Asp. Two iterations on OWL30.1 were required to
reach convergence, at which point a true set comprising 28 sequences was
identified. Several partial matches were also found, all of which are true
but distant family members, including two yeast gamma polymerases.
An update on SPTR37_9f identified a true set of 26 sequences, and 15
partial matches.
SUMMARY INFORMATION
26 codes involving 9 elements
0 codes involving 8 elements
0 codes involving 7 elements
3 codes involving 6 elements
2 codes involving 5 elements
3 codes involving 4 elements
4 codes involving 3 elements
3 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
9| 26 26 26 26 26 26 26 26 26
8| 0 0 0 0 0 0 0 0 0
7| 0 0 0 0 0 0 0 0 0
6| 3 0 3 1 3 0 2 3 3
5| 0 0 2 0 2 1 1 2 2
4| 1 0 2 2 3 1 0 2 1
3| 3 0 4 0 4 0 0 1 0
2| 0 0 0 1 2 0 0 1 2
--+----------------------------------------------
| 1 2 3 4 5 6 7 8 9
True positives..
DPO1_BACST O24675 Q45458 DPO1_BACCA
DPO1_THETH DPO1_THECA DPO1_THEAQ DPO1_THEFI
DPO1_THEFL DPO1_BACSU DPO1_STRPN DPO1_ECOLI
DPO1_CHLAU DPO1_DEIRA DPO1_LACLC DPO1_HAEIN
DPO1_MYCTU DPO1_MYCLE DPO1_TREPA DPO1_ANATH
O51498 DPO1_RICPR Q55971 O84500
DPO1_HELPY DPOL_BPSP1
Subfamily: Codes involving 6 elements
Subfamily True positives..
O75417 O18475 DPO1_AQUAE
Subfamily: Codes involving 5 elements
Subfamily True positives..
O65531 Q23133
Subfamily: Codes involving 4 elements
Subfamily True positives..
DPOL_BPMD2 DPOL_BPT5 Q38032
Subfamily: Codes involving 3 elements
Subfamily True positives..
DPOL_BPML5 DPOL_BPT3 DPOL_BPT7 Q38544
Subfamily: Codes involving 2 elements
Subfamily True positives..
DPOG_YEAST DPOG_SCHPO DPOG_PICPA
PROTEIN TITLES
DPO1_BACST DNA POLYMERASE I (EC 2.7.7.7) (POL I) - BACILLUS STEAROTHERM
O24675 DNA POLYMERASE I - BACILLUS STEAROTHERMOPHILUS.
Q45458 DNA POLYMERASE I - BACILLUS STEAROTHERMOPHILUS.
DPO1_BACCA DNA POLYMERASE I (EC 2.7.7.7) (POL I) - BACILLUS CALDOTENAX.
DPO1_THETH DNA POLYMERASE I, THERMOSTABLE (EC 2.7.7.7) (TTH POLYMERASE
DPO1_THECA DNA POLYMERASE I, THERMOSTABLE (EC 2.7.7.7) (TAC POLYMERASE
DPO1_THEAQ DNA POLYMERASE I, THERMOSTABLE (EC 2.7.7.7) (TAQ POLYMERASE
DPO1_THEFI DNA POLYMERASE I, THERMOSTABLE (EC 2.7.7.7) (TFI POLYMERASE
DPO1_THEFL DNA POLYMERASE I, THERMOSTABLE (EC 2.7.7.7) (TFL POLYMERASE
DPO1_BACSU DNA POLYMERASE I (EC 2.7.7.7) (POL I) - BACILLUS SUBTILIS.
DPO1_STRPN DNA POLYMERASE I (EC 2.7.7.7) (POL I) - STREPTOCOCCUS PNEUMO
DPO1_ECOLI DNA POLYMERASE I (EC 2.7.7.7) (POL I) - ESCHERICHIA COLI.
DPO1_CHLAU DNA POLYMERASE I (EC 2.7.7.7) (POL I) - CHLOROFLEXUS AURANTI
DPO1_DEIRA DNA POLYMERASE I (EC 2.7.7.7) (POL I) - DEINOCOCCUS RADIODUR
DPO1_LACLC DNA POLYMERASE I (EC 2.7.7.7) (POL I) - LACTOCOCCUS LACTIS (
DPO1_HAEIN DNA POLYMERASE I (EC 2.7.7.7) (POL I) - HAEMOPHILUS INFLUENZ
DPO1_MYCTU DNA POLYMERASE I (EC 2.7.7.7) (POL I) - MYCOBACTERIUM TUBERC
DPO1_MYCLE DNA POLYMERASE I (EC 2.7.7.7) (POL I) - MYCOBACTERIUM LEPRAE
DPO1_TREPA DNA POLYMERASE I (EC 2.7.7.7) (POL I) - TREPONEMA PALLIDUM.
DPO1_ANATH DNA POLYMERASE I (EC 2.7.7.7) (POL I) - ANAEROCELLUM THERMOP
O51498 DNA POLYMERASE I (POLA) - BORRELIA BURGDORFERI (LYME DISEASE
DPO1_RICPR DNA POLYMERASE I (EC 2.7.7.7) (POL I) - RICKETTSIA PROWAZEKI
Q55971 DNA POLYMERASE I - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
O84500 DNA POLYMERASE I - CHLAMYDIA TRACHOMATIS.
DPO1_HELPY DNA POLYMERASE I (EC 2.7.7.7) (POL I) - HELICOBACTER PYLORI
DPOL_BPSP1 DNA POLYMERASE (EC 2.7.7.7) - BACTERIOPHAGE SP01.
O75417 DNA POLYMERASE ETA (EC 2.7.7.7) - HOMO SAPIENS (HUMAN).
O18475 MUS308 - DROSOPHILA MELANOGASTER (FRUIT FLY).
DPO1_AQUAE DNA POLYMERASE I (EC 2.7.7.7) (POL I) - AQUIFEX AEOLICUS.
O65531 HYPOTHETICAL 172.0 KD PROTEIN - ARABIDOPSIS THALIANA (MOUSE-
Q23133 W03A3.2 PROTEIN - CAENORHABDITIS ELEGANS.
DPOL_BPMD2 DNA POLYMERASE (EC 2.7.7.7) - MYCOBACTERIOPHAGE D29.
DPOL_BPT5 DNA POLYMERASE (EC 2.7.7.7) - BACTERIOPHAGE T5.
Q38032 ORF 11 - BACTERIOPHAGE PHI-C31.
DPOL_BPML5 DNA POLYMERASE (EC 2.7.7.7) - MYCOBACTERIOPHAGE L5.
DPOL_BPT3 DNA POLYMERASE (EC 2.7.7.7) - BACTERIOPHAGE T3.
DPOL_BPT7 DNA POLYMERASE (EC 2.7.7.7) (T7 DNA POLYMERASE) - BACTERIOPH
Q38544 5B - BACTERIOPHAGE T3.
DPOG_YEAST DNA POLYMERASE GAMMA (EC 2.7.7.7) (MITOCHONDRIAL DNA POLYMER
DPOG_SCHPO DNA POLYMERASE GAMMA (EC 2.7.7.7) (MITOCHONDRIAL DNA POLYMER
DPOG_PICPA DNA POLYMERASE GAMMA (EC 2.7.7.7) (MITOCHONDRIAL DNA POLYMER
SCAN HISTORY
OWL30_1 2 100 NSINGLE
SPTR37_9f 2 115 NSINGLE
INITIAL MOTIF SETS
DNAPOLI1 Length of motif = 23 Motif number = 1
DNA-polymerase family A motif I - 1
PCODE ST INT
LHTRFNQTATATGRLSSSDPNLQ DPO1_THETH 562 562
LHTRFNQTATATGRLSSSDPNLQ DPO1_THEAQ 560 560
LHTRFNQTATATGRLSSSDPNLQ DPO1_THEFL 559 559
LHTTFAQTAVATGRLSSLNPNLQ DPO1_DEIRA 650 650
VHTIFNQALTQTGRLSSTEPNLQ DPO1_BACCA 603 603
IHTRYVQDLTQTGRLSSVDPNLQ DPO1_STRPN 602 602
VHTSYHQAVTATGRLSSTDPNLQ DPO1_ECOLI 655 655
VHTSYHQAVTATGRLSSSDPNLQ DPO1_HAEIN 658 658
IHTTFNQTIAATGRLSSTEPNLQ DPO1_MYCTU 629 629
IHTTFNQTIATTGRLSSTEPNLQ DPO1_MYCLE 633 633
IHTDFNQAVTSTGRLSSSNPNLQ S77056 699 699
IHTTFLQTSTTTGRLSSQEPNLQ RPFTSY1 596 596
IHTTFIQTGTATGRLSSHSPNLQ DPO1_HELPY 621 621
VHPSYNIHGTVTGRLSSNEPNAQ DPOL_BPSP1 577 577
DNAPOLI2 Length of motif = 16 Motif number = 2
DNA-polymerase family A motif II - 1
PCODE ST INT
NIPVRTPLGQRIRRAF DPO1_THETH 585 0
NIPVRTPLGQRIRRAF DPO1_THEAQ 583 0
NIPVRTPLGQRIRRAF DPO1_THEFL 582 0
NIPIRSELGREIRKGF DPO1_DEIRA 673 0
NIPIRLEEGRKIRQAF DPO1_BACCA 626 0
NIPARLEQGRLIRKAF DPO1_STRPN 625 0
NIPVRNEEGRRIRQAF DPO1_ECOLI 678 0
NIPIRNEEGRHIRQAF DPO1_HAEIN 681 0
NIPIRTDAGRRIRDAF DPO1_MYCTU 652 0
NIPIRTNAGRQIRDAF DPO1_MYCLE 656 0
NIPIRSDFSRQIRRAF S77056 722 0
NVPIRSSDGNKIREAF RPFTSY1 619 0
NIPVRSPKGLLIRKGF DPO1_HELPY 644 0
NTPTLFQYNFEIKKMF DPOL_BPSP1 606 6
DNAPOLI3 Length of motif = 24 Motif number = 3
DNA-polymerase family A motif III - 1
PCODE ST INT
ALVALDYSQIELRVLAHLSGDENL DPO1_THETH 607 6
LLVALDYSQIELRVLAHLSGDENL DPO1_THEAQ 605 6
VLVVLDYSQIELRVLAHLSGDENL DPO1_THEFL 604 6
TLIAADYSQIELRLLAHIADDPLM DPO1_DEIRA 695 6
LIFAADYSQIELRVLAHIAEDDNL DPO1_BACCA 649 7
VLLSSDYSQIELRVLAHISKDEHL DPO1_STRPN 648 7
VIVSADYSQIELRIMAHLSRDKGL DPO1_ECOLI 700 6
SIVAADYSQIELRIMAHLSGDQGL DPO1_HAEIN 703 6
ELMTADYSQIEMRIMAHLSGDEGL DPO1_MYCTU 675 7
ELMTADYSQIEMRIMAHLSRDEGL DPO1_MYCLE 682 10
LLVSADYSQIELRILAHLSQEPVL S77056 744 6
KLISADYSQIELRILSHIANIDVL RPFTSY1 641 6
CLLGVDYSQIELRLLAHFSQDKDL DPO1_HELPY 667 7
VIVQFDYSQLELRILVCYYSRPYT DPOL_BPSP1 630 8
DNAPOLI4 Length of motif = 14 Motif number = 4
DNA-polymerase family A motif IV - 1
PCODE ST INT
GKDIHTQTASWMFG DPO1_THETH 637 6
GRDIHTETASWMFG DPO1_THEAQ 635 6
GRDIHTQTASWMFG DPO1_THEFL 634 6
GADIHRRTAAQVLG DPO1_DEIRA 725 6
DLDIHTKTAMDIFQ DPO1_BACCA 679 6
GADIHTSTAMRVFG DPO1_STRPN 678 6
GKDIHRATAAEVFG DPO1_ECOLI 730 6
GKDIHRSTAAEIFG DPO1_HAEIN 733 6
GEDLHSFVASRAFG DPO1_MYCTU 705 6
GEDLHSFVASRAFG DPO1_MYCLE 712 6
RQDVHGVTAKLLFG S77056 774 6
KEDIHTQTACQIFN RPFTSY1 671 6
GRDIHLETSKALFG DPO1_HELPY 697 6
GADLHKAVASDAFG DPOL_BPSP1 660 6
DNAPOLI5 Length of motif = 26 Motif number = 5
DNA-polymerase family A motif V - 1
PCODE ST INT
RRAAKTVNFGVLYGMSAHRLSQELAI DPO1_THETH 661 10
RRAAKTINFGVLYGMSAHRLSQELAI DPO1_THEAQ 659 10
RRAAKTINFGVLYGMSAHRLSGELSI DPO1_THEFL 658 10
RRAAKTVNFGVLYGMSAHRLSNDLGI DPO1_DEIRA 749 10
RRQAKAVNFGIVYGISDYGLAQNLNI DPO1_BACCA 703 10
RRNAKAVNFGVVYGISDFGLSNNLGI DPO1_STRPN 703 11
RRSAKAINFGLIYGMSAFGLARQLNI DPO1_ECOLI 754 10
RRNAKAINFGLIYGMSAFGLSRQLGI DPO1_HAEIN 757 10
RRRVKAMSYGLAYGLSAYGLSQQLKI DPO1_MYCTU 729 10
RRRVKAMSYGLAYGLSAYGLATQLKI DPO1_MYCLE 736 10
RNLGKTINFGVIYGMGAQRFARETGI S77056 796 8
RRKAKAINFGIIYGISAFGLAKQLNV RPFTSY1 695 10
RSIAKSINFGLVYGMGSKKLSETLNI DPO1_HELPY 718 7
RTASKKIQFGIVYQESARGLSEDLRA DPOL_BPSP1 684 10
DNAPOLI6 Length of motif = 12 Motif number = 6
DNA-polymerase family A motif VI - 1
PCODE ST INT
YFQSFPKVRAWI DPO1_THETH 698 11
YFQSFPKVRAWI DPO1_THEAQ 696 11
YFQSYPKVRAWI DPO1_THEFL 695 11
YFATYPGIRRYI DPO1_DEIRA 786 11
YFESFPGVKRYM DPO1_BACCA 740 11
YFERFPGIKNYM DPO1_STRPN 740 11
YFERYPGVLEYM DPO1_ECOLI 791 11
YFQRYPSVQQFM DPO1_HAEIN 794 11
YFARFGGVRDYL DPO1_MYCTU 766 11
YFARFGGVRDYL DPO1_MYCLE 773 11
YHRTYAQVFDYL S77056 833 11
YFAEYKGVQEYM RPFTSY1 732 11
YFKRFPSIKDYL DPO1_HELPY 755 11
YFKRFPKVSKWI DPOL_BPSP1 726 16
DNAPOLI7 Length of motif = 12 Motif number = 7
DNA-polymerase family A motif VII - 1
PCODE ST INT
GYVETLFGRRRY DPO1_THETH 720 10
GYVETLFGRRRY DPO1_THEAQ 718 10
GYVETLFGRRRY DPO1_THEFL 717 10
GYVETLYGRRRY DPO1_DEIRA 808 10
GYVTTLLHRRRY DPO1_BACCA 762 10
GYVETLFKRRRE DPO1_STRPN 762 10
GYVETLDGRRLY DPO1_ECOLI 813 10
GYVETLFGRRLY DPO1_HAEIN 816 10
GYTSTVLGRRRY DPO1_MYCTU 788 10
GYTSTVLGRRRY DPO1_MYCLE 795 10
GYVTTIVGRRRY S77056 855 10
GYVTNFFGRKCF RPFTSY1 754 10
SKAFTLLGRYRV DPO1_HELPY 777 10
STVKTLTGATRN DPOL_BPSP1 748 10
DNAPOLI8 Length of motif = 17 Motif number = 8
DNA-polymerase family A motif VIII - 1
PCODE ST INT
NMPVQGTAADLMKLAMV DPO1_THETH 752 20
NMPVQGTAADLMKLAMV DPO1_THEAQ 750 20
NMPVQGTAADLMKLAMV DPO1_THEFL 749 20
NMPIQGTAADIMKLAMV DPO1_DEIRA 840 20
NTPIQGSAADIIKKAMI DPO1_BACCA 794 20
NSPIQGSAADILKIAMI DPO1_STRPN 794 20
NAPMQGTAADIIKRAMI DPO1_ECOLI 845 20
NAPMQGTAADIIKRAMI DPO1_HAEIN 848 20
NAPIQGSAADIIKVAMI DPO1_MYCTU 820 20
NAPIQGSAADIIKVAMI DPO1_MYCLE 827 20
NAPIQGSSADIIKIAMV S77056 905 38
NAPIQGTNADIIKIAMI RPFTSY1 784 18
NAIFQGSASDLLKLGML DPO1_HELPY 808 19
NTPIQGTGSDCTLMSLI DPOL_BPSP1 780 20
DNAPOLI9 Length of motif = 14 Motif number = 9
DNA-polymerase family A motif IX - 1
PCODE ST INT
RMLLQVHDELLLEA DPO1_THETH 780 11
RMLLQVHDELVLEA DPO1_THEAQ 778 11
RMLLQVHDELVLEA DPO1_THEFL 777 11
RMLLQVHDELLIEA DPO1_DEIRA 868 11
RLLLQVHDELILEA DPO1_BACCA 824 13
KMLLQVHDEIVLEV DPO1_STRPN 824 13
RMIMQVHDELVFEV DPO1_ECOLI 875 13
EMIMQVHDELVFEV DPO1_HAEIN 877 12
RMLLQVHDELLFEI DPO1_MYCTU 850 13
RMLLQVHDELLFEV DPO1_MYCLE 857 13
RMLLQVHDELIFEM S77056 933 11
RLILQIHDELLFEV RPFTSY1 814 13
RLLLQVHDELIFEI DPO1_HELPY 837 12
RICITVHDSIVLDC DPOL_BPSP1 810 13
FINAL MOTIF SETS
DNAPOLI1 Length of motif = 23 Motif number = 1
DNA-polymerase family A motif I - 2
PCODE ST INT
VHTMFNQALTQTGRLSSVEPNLQ DPO1_BACST 602 602
VHTMFNQTLTQTGRLSSAEPNLQ O24675 604 604
VHTMFNQALTQTGRLSSAEPNLQ Q45458 602 602
VHTIFNQALTQTGRLSSTEPNLQ DPO1_BACCA 603 603
LHTRFNQTATATGRLSSSDPNLQ DPO1_THECA 562 562
LHTRFNQTATATGRLSSSDPNLQ DPO1_THETH 562 562
LHTRFNQTATATGRLSSSDPNLQ DPO1_THEAQ 560 560
LHTRFNQTATATGRLSSSDPNLQ DPO1_THEFI 560 560
LHTRFNQTATATGRLSSSDPNLQ DPO1_THEFL 559 559
VHTRFNQALTQTGRLSSTDPNLQ DPO1_BACSU 606 606
IHTRYVQDLTQTGRLSSVDPNLQ DPO1_STRPN 602 602
VHTSYHQAVTATGRLSSTDPNLQ DPO1_ECOLI 655 655
IHTSYNQLGAATGRLSSNNPNLQ DPO1_CHLAU 664 664
LHTTFAQTAVATGRLSSLNPNLQ DPO1_DEIRA 650 650
IHTRYVQDLTQTGRLSSVDPNLQ DPO1_LACLC 603 603
VHTSYHQAVTATGRLSSSDPNLQ DPO1_HAEIN 658 658
IHTTFNQTIAATGRLSSTEPNLQ DPO1_MYCTU 629 629
IHTTFNQTIATTGRLSSTEPNLQ DPO1_MYCLE 633 633
VHTSFVQIGTATGRLSSRNPNLQ DPO1_TREPA 724 724
VHTTFIQTGTATGRLASSDPNLQ DPO1_ANATH 577 577
LHTSFIQTKTATGRITSINPNLQ O51498 635 635
IHTTFLQTSTTTGRLSSQEPNLQ DPO1_RICPR 596 596
IHTDFNQAVTSTGRLSSSNPNLQ Q55971 699 699
IHPTFNQVGTVTGRLSCQDPNLQ O84500 594 594
IHTTFIQTGTATGRLSSHSPNLQ DPO1_HELPY 621 621
VHPSYNIHGTVTGRLSSNEPNAQ DPOL_BPSP1 577 577
DNAPOLI2 Length of motif = 16 Motif number = 2
DNA-polymerase family A motif II - 2
PCODE ST INT
NIPIRLEEGRKIRQAF DPO1_BACST 625 0
NIPIRLEEGRKIRQAF O24675 627 0
NIPIRLEEGRKIRQAF Q45458 625 0
NIPIRLEEGRKIRQAF DPO1_BACCA 626 0
NIPVRTPLGQRIRRAF DPO1_THECA 585 0
NIPVRTPLGQRIRRAF DPO1_THETH 585 0
NIPVRTPLGQRIRRAF DPO1_THEAQ 583 0
NIPVRTPLGQRIRKAF DPO1_THEFI 583 0
NIPVRTPLGQRIRRAF DPO1_THEFL 582 0
NIPIRLEEGRKIRQAF DPO1_BACSU 629 0
NIPARLEQGRLIRKAF DPO1_STRPN 625 0
NIPVRNEEGRRIRQAF DPO1_ECOLI 678 0
NIPVRTEEGREIRRAF DPO1_CHLAU 687 0
NIPIRSELGREIRKGF DPO1_DEIRA 673 0
NIPVRLEEGRKIRKAF DPO1_LACLC 626 0
NIPIRNEEGRHIRQAF DPO1_HAEIN 681 0
NIPIRTDAGRRIRDAF DPO1_MYCTU 652 0
NIPIRTNAGRQIRDAF DPO1_MYCLE 656 0
NIPIKSTEGRKIRQAF DPO1_TREPA 747 0
NIPVKYDEGKLIRKVF DPO1_ANATH 600 0
NIPIKDEKGRKIRKAF O51498 658 0
NVPIRSSDGNKIREAF DPO1_RICPR 619 0
NIPIRSDFSRQIRRAF Q55971 722 0
NIPVRSERGRSLREAF O84500 617 0
NIPVRSPKGLLIRKGF DPO1_HELPY 644 0
NTPTLFQYNFEIKKMF DPOL_BPSP1 606 6
DNAPOLI3 Length of motif = 24 Motif number = 3
DNA-polymerase family A motif III - 2
PCODE ST INT
LIFAADYSQIELRVLAHIAEDDNL DPO1_BACST 648 7
LIFAADYSQIELRVLAHIADDDNL O24675 650 7
LIFAADYSQIELRVLAHIADDDNL Q45458 648 7
LIFAADYSQIELRVLAHIAEDDNL DPO1_BACCA 649 7
ALVALDYSQIELRVLAHLSGDENL DPO1_THECA 607 6
ALVALDYSQIELRVLAHLSGDENL DPO1_THETH 607 6
LLVALDYSQIELRVLAHLSGDENL DPO1_THEAQ 605 6
LLLAADYSQIELRVLAHLSGDENL DPO1_THEFI 605 6
VLVVLDYSQIELRVLAHLSGDENL DPO1_THEFL 604 6
LIFAADYSQIELRVLAHISKDENL DPO1_BACSU 652 7
VLLSSDYSQIELRVLAHISKDEHL DPO1_STRPN 648 7
VIVSADYSQIELRIMAHLSRDKGL DPO1_ECOLI 700 6
RFVAADYSQIELRVLAHMSGDENL DPO1_CHLAU 709 6
TLIAADYSQIELRLLAHIADDPLM DPO1_DEIRA 695 6
LLLSSDYSQIELRVLAHISADEHL DPO1_LACLC 648 6
SIVAADYSQIELRIMAHLSGDQGL DPO1_HAEIN 703 6
ELMTADYSQIEMRIMAHLSGDEGL DPO1_MYCTU 675 7
ELMTADYSQIEMRIMAHLSRDEGL DPO1_MYCLE 682 10
ELISADYTQIELVVLAHLSQDRNL DPO1_TREPA 769 6
VLIDADYSQIELRILAHISEDERL DPO1_ANATH 622 6
IFISADYSQIELAILAHLSQDEVL O51498 680 6
KLISADYSQIELRILSHIANIDVL DPO1_RICPR 641 6
LLVSADYSQIELRILAHLSQEPVL Q55971 744 6
YFLAADYSQIELRFLAHLSQDEML O84500 640 7
CLLGVDYSQIELRLLAHFSQDKDL DPO1_HELPY 667 7
VIVQFDYSQLELRILVCYYSRPYT DPOL_BPSP1 630 8
DNAPOLI4 Length of motif = 14 Motif number = 4
DNA-polymerase family A motif IV - 2
PCODE ST INT
GLDIHTKTAMDIFH DPO1_BACST 678 6
DLDIHTKTAMDIFH O24675 680 6
DLDIHTKTAMDIFH Q45458 678 6
DLDIHTKTAMDIFQ DPO1_BACCA 679 6
GKDIHTQTASWMFG DPO1_THECA 637 6
GKDIHTQTASWMFG DPO1_THETH 637 6
GRDIHTETASWMFG DPO1_THEAQ 635 6
GKDIHTETAAWMFG DPO1_THEFI 635 6
GRDIHTQTASWMFG DPO1_THEFL 634 6
DMDIHTKTAMDVFH DPO1_BACSU 682 6
GADIHTSTAMRVFG DPO1_STRPN 678 6
GKDIHRATAAEVFG DPO1_ECOLI 730 6
GLDIHAATASRLFG DPO1_CHLAU 739 6
GADIHRRTAAQVLG DPO1_DEIRA 725 6
GADIHTSTAMRVFG DPO1_LACLC 678 6
GKDIHRSTAAEIFG DPO1_HAEIN 733 6
GEDLHSFVASRAFG DPO1_MYCTU 705 6
GEDLHSFVASRAFG DPO1_MYCLE 712 6
HIDIHALTAAYIFN DPO1_TREPA 799 6
NVDIHSQTAAEVFG DPO1_ANATH 652 6
NKDIHTETASKLFK O51498 710 6
KEDIHTQTACQIFN DPO1_RICPR 671 6
RQDVHGVTAKLLFG Q55971 774 6
GEDIHAFTASQVFN O84500 670 6
GRDIHLETSKALFG DPO1_HELPY 697 6
GADLHKAVASDAFG DPOL_BPSP1 660 6
DNAPOLI5 Length of motif = 26 Motif number = 5
DNA-polymerase family A motif V - 2
PCODE ST INT
RRQAKAVNFGIVYGISDYGLAQNLNI DPO1_BACST 702 10
RRQAKAVNFGIVYGISDYGLAQNLNI O24675 704 10
RRQAKAVNFGIVYGISDYGLAQNLNI Q45458 702 10
RRQAKAVNFGIVYGISDYGLAQNLNI DPO1_BACCA 703 10
RRAAKTVNFGVLYGMSAHRLSQELAI DPO1_THECA 661 10
RRAAKTVNFGVLYGMSAHRLSQELAI DPO1_THETH 661 10
RRAAKTINFGVLYGMSAHRLSQELAI DPO1_THEAQ 659 10
RRAAKTVNFGVLYGMSAHRLSQELGI DPO1_THEFI 659 10
RRAAKTINFGVLYGMSAHRLSGELSI DPO1_THEFL 658 10
RRQAKAVNFGIVYGISDYGLSQNLGI DPO1_BACSU 706 10
RRNAKAVNFGVVYGISDFGLSNNLGI DPO1_STRPN 703 11
RRSAKAINFGLIYGMSAFGLARQLNI DPO1_ECOLI 754 10
RRVAKTVVFGVIYGISAFGLAQRLGI DPO1_CHLAU 763 10
RRAAKTVNFGVLYGMSAHRLSNDLGI DPO1_DEIRA 749 10
RRNAKAVNFGVVYGISDFGLARNLGI DPO1_LACLC 703 11
RRNAKAINFGLIYGMSAFGLSRQLGI DPO1_HAEIN 757 10
RRRVKAMSYGLAYGLSAYGLSQQLKI DPO1_MYCTU 729 10
RRRVKAMSYGLAYGLSAYGLATQLKI DPO1_MYCLE 736 10
RRIAKTINFGIVYGMSAFRLSDELKI DPO1_TREPA 823 10
RSQAKAVNFGIVYGISDYGLARDIKI DPO1_ANATH 676 10
RRIAKSINFGIIYRMSDFRLAKELGI O51498 734 10
RRKAKAINFGIIYGISAFGLAKQLNV DPO1_RICPR 695 10
RNLGKTINFGVIYGMGAQRFARETGI Q55971 796 8
RYQAKAVNFGLVYGQQAYGLSKILKI O84500 694 10
RSIAKSINFGLVYGMGSKKLSETLNI DPO1_HELPY 718 7
RTASKKIQFGIVYQESARGLSEDLRA DPOL_BPSP1 684 10
DNAPOLI6 Length of motif = 12 Motif number = 6
DNA-polymerase family A motif VI - 2
PCODE ST INT
YFASFPGVKQYM DPO1_BACST 739 11
YFASFPGVRRYM O24675 741 11
YFASFPGVKQYM Q45458 739 11
YFESFPGVKRYM DPO1_BACCA 740 11
YFQSFPKVRAWI DPO1_THECA 698 11
YFQSFPKVRAWI DPO1_THETH 698 11
YFQSFPKVRAWI DPO1_THEAQ 696 11
YFQSFPKVRAWI DPO1_THEFI 696 11
YFQSYPKVRAWI DPO1_THEFL 695 11
YLESFQGVKAYM DPO1_BACSU 743 11
YFERFPGIKNYM DPO1_STRPN 740 11
YFERYPGVLEYM DPO1_ECOLI 791 11
LFAQFPGIRRYI DPO1_CHLAU 800 11
YFATYPGIRRYI DPO1_DEIRA 786 11
YFERYPGIKTYM DPO1_LACLC 740 11
YFQRYPSVQQFM DPO1_HAEIN 794 11
YFARFGGVRDYL DPO1_MYCTU 766 11
YFARFGGVRDYL DPO1_MYCLE 773 11
YFETYPGVYAFS DPO1_TREPA 860 11
YFERYPKVKEYL DPO1_ANATH 713 11
YFDSYPKIKEFI O51498 771 11
YFAEYKGVQEYM DPO1_RICPR 732 11
YHRTYAQVFDYL Q55971 833 11
YFARYPLAAEFI O84500 731 11
YFKRFPSIKDYL DPO1_HELPY 755 11
YFKRFPKVSKWI DPOL_BPSP1 726 16
DNAPOLI7 Length of motif = 12 Motif number = 7
DNA-polymerase family A motif VII - 2
PCODE ST INT
GYVTTLLHRRRY DPO1_BACST 761 10
GYVTTLLHRRRY O24675 763 10
GYVTTLLHRRRY Q45458 761 10
GYVTTLLHRRRY DPO1_BACCA 762 10
GYVETLFGRRRY DPO1_THECA 720 10
GYVETLFGRRRY DPO1_THETH 720 10
GYVETLFGRRRY DPO1_THEAQ 718 10
GYVETLFGRRRY DPO1_THEFI 718 10
GYVETLFGRRRY DPO1_THEFL 717 10
GYVTTLMHRRRY DPO1_BACSU 765 10
GYVETLFKRRRE DPO1_STRPN 762 10
GYVETLDGRRLY DPO1_ECOLI 813 10
GYVQTLFGRRRV DPO1_CHLAU 822 10
GYVETLYGRRRY DPO1_DEIRA 808 10
GFVETMSHRRRK DPO1_LACLC 762 10
GYVETLFGRRLY DPO1_HAEIN 816 10
GYTSTVLGRRRY DPO1_MYCTU 788 10
GYTSTVLGRRRY DPO1_MYCLE 795 10
GYVTSLAGRRRY DPO1_TREPA 882 10
GFVLTLFNRKRY DPO1_ANATH 735 10
GYSETILKRRRY O51498 793 10
GYVTNFFGRKCF DPO1_RICPR 754 10
GYVTTIVGRRRY Q55971 855 10
QKVTTMLGRERI O84500 753 10
SKAFTLLGRYRV DPO1_HELPY 777 10
STVKTLTGATRN DPOL_BPSP1 748 10
DNAPOLI8 Length of motif = 17 Motif number = 8
DNA-polymerase family A motif VIII - 2
PCODE ST INT
NTPIQGSAADIIKKAMI DPO1_BACST 793 20
NTPIQGSAADIIKKAMI O24675 795 20
NTPIQGSAADIIKKAMI Q45458 793 20
NTPIQGSAADIIKKAMI DPO1_BACCA 794 20
NMPVQGTAADLMKLAMV DPO1_THECA 752 20
NMPVQGTAADLMKLAMV DPO1_THETH 752 20
NMPVQGTAADLMKLAMV DPO1_THEAQ 750 20
NMPVQGTAADLMKIAMV DPO1_THEFI 750 20
NMPVQGTAADLMKLAMV DPO1_THEFL 749 20
NTPIQGSAADIIKKAMI DPO1_BACSU 797 20
NSPIQGSAADILKIAMI DPO1_STRPN 794 20
NAPMQGTAADIIKRAMI DPO1_ECOLI 845 20
NAPIQGTAADLMKMAMV DPO1_CHLAU 853 19
NMPIQGTAADIMKLAMV DPO1_DEIRA 840 20
NSPIQGSAADILKIAMI DPO1_LACLC 794 20
NAPMQGTAADIIKRAMI DPO1_HAEIN 848 20
NAPIQGSAADIIKVAMI DPO1_MYCTU 820 20
NAPIQGSAADIIKVAMI DPO1_MYCLE 827 20
NTQIQSSAADIVKIAMI DPO1_TREPA 914 20
NSPIQGSPADIMKLAMI DPO1_ANATH 767 20
NSIIQGSAADIMKIAMV O51498 825 20
NAPIQGTNADIIKIAMI DPO1_RICPR 784 18
NAPIQGSSADIIKIAMV Q55971 905 38
NTRIQGSAAELIKLAML O84500 784 19
NAIFQGSASDLLKLGML DPO1_HELPY 808 19
NTPIQGTGSDCTLMSLI DPOL_BPSP1 780 20
DNAPOLI9 Length of motif = 14 Motif number = 9
DNA-polymerase family A motif IX - 2
PCODE ST INT
RLLLQVHDELILEA DPO1_BACST 823 13
RLLLQVHDELILEA O24675 825 13
RLLLQVHDELILEA Q45458 823 13
RLLLQVHDELILEA DPO1_BACCA 824 13
RMLLQVHDELLLEA DPO1_THECA 780 11
RMLLQVHDELLLEA DPO1_THETH 780 11
RMLLQVHDELVLEA DPO1_THEAQ 778 11
HLLLQVHDELVLEV DPO1_THEFI 778 11
RMLLQVHDELVLEA DPO1_THEFL 777 11
RLLLQVHDELIFEA DPO1_BACSU 827 13
KMLLQVHDEIVLEV DPO1_STRPN 824 13
RMIMQVHDELVFEV DPO1_ECOLI 875 13
RLLLQVHDELIAEA DPO1_CHLAU 883 13
RMLLQVHDELLIEA DPO1_DEIRA 868 11
KLLLQVHDEIILDV DPO1_LACLC 824 13
EMIMQVHDELVFEV DPO1_HAEIN 877 12
RMLLQVHDELLFEI DPO1_MYCTU 850 13
RMLLQVHDELLFEV DPO1_MYCLE 857 13
QLLLQVHDELIFEA DPO1_TREPA 944 13
KIILQVHDELLIEA DPO1_ANATH 797 13
KILLQVHDEMLIES O51498 855 13
RLILQIHDELLFEV DPO1_RICPR 814 13
RMLLQVHDELIFEM Q55971 933 11
RLLLQIHDELLFEV O84500 814 13
RLLLQVHDELIFEI DPO1_HELPY 837 12
RICITVHDSIVLDC DPOL_BPSP1 810 13
User query: Display/Full Code "DNAPOLI"