WORKLIST ENTRIES (1):
GLHYDRLASE4 View alignment View Structure Glycosyl hydrolase family 4 signature
Type of fingerprint: COMPOUND with 7 elements
Links:
PRINTS; PR00131 GLHYDRLASE1; PR00132 GLHYDRLASE2; PR00133 GLHYDRLASE3
PRINTS; PR00733 GLHYDRLASE6; PR00734 GLHYDRLASE7; PR00735 GLHYDRLASE8
PRINTS; PR00134 GLHYDRLASE10; PR00911 GLHYDRLASE11; PR00736 GLHYDRLASE15
PRINTS; PR00737 GLHYDRLASE16; PR00738 GLHYDRLASE20; PR00739 GLHYDRLASE26
PRINTS; PR00740 GLHYDRLASE27; PR00741 GLHYDRLASE29; PR00843 GLHYDRLASE30
PRINTS; PR00742 GLHYDRLASE35; PR00743 GLHYDRLASE36; PR00744 GLHYDRLASE37
PRINTS; PR00745 GLHYDRLASE39; PR00746 GLHYDRLASE41; PR00747 GLHYDRLASE47
PRINTS; PR00844 GLHYDRLASE48; PR00845 GLHYDRLASE52; PR00846 GLHYDRLASE56
PRINTS; PR00849 GLHYDRLASE58; PR00850 GLHYDRLASE59; PR00748 MELIBIASE
PRINTS; PR00137 LYSOZYME; PR00684 T4LYSOZYME; PR00749 LYSOZYMEG
PRINTS; PR00110 ALPHAAMYLASE; PR00750 BETAAMYLASE
INTERPRO; IPR001088
PROSITE; PS01324 GLYCOSYL_HYDROL_F4
Creation date 26-MAY-1997; UPDATE 07-JUN-1999
1. HENRISSAT, B. AND BAIROCH, A.
New families in the classification of glycosyl hydrolases based on amino
acid sequence similarities.
BIOCHEM.J. 293 781-788 (1993).
2. HENRISSAT, B.
A classification of glycosyl hydrolases based on amino acid sequence
similarities.
BIOCHEM.J. 280 309-316 (1991).
3. DAVIES, G. AND HENRISSAT, B.
Structures and mechanisms of glycosyl hydrolases.
STRUCTURE 3 853-859 (1995).
4. HENRISSAT, B. AND BAIROCH, A.
Updating the sequence-based classification of glycosyl hydrolases.
BIOCHEM.J. 316 695-696 (1996).
O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that
hydrolyse the glycosidic bond between two or more carbohydrates, or between
a carbohydrate and a non-carbohydrate moiety. A classification system for
glycosyl hydrolases, based on sequence similarity, has led to the definition
of up to 60 different families [1-4] (http://expasy.hcuge.ch/cgi-bin/lists?
glycosid.txt). Family 4 includes 6-phospho-beta-glucosidases, alpha-
galactosidases, and B.subtilis LPLD protein.
GLHYDRLASE4 is a 7-element fingerprint that provides a signature for
family 4 glycosyl hydrolases. The fingerprint was derived from an initial
alignment of 7 sequences: the motifs were drawn from short conserved regions
spanning the N-terminal half of the alignment. A single iteration on OWL29.3
was required to reach convergence, no further sequences being identified
beyond the starting set.
An update on SPTR37_9f identified a true set of 8 sequences, and 1
partial match.
SUMMARY INFORMATION
8 codes involving 7 elements
1 codes involving 6 elements
0 codes involving 5 elements
0 codes involving 4 elements
0 codes involving 3 elements
0 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
7| 8 8 8 8 8 8 8
6| 0 1 1 1 1 1 1
5| 0 0 0 0 0 0 0
4| 0 0 0 0 0 0 0
3| 0 0 0 0 0 0 0
2| 0 0 0 0 0 0 0
--+------------------------------------
| 1 2 3 4 5 6 7
True positives..
GLVG_BACSU GLVG_ECOLI MALH_FUSMR CELF_BACSU
CELF_ECOLI AGAL_BACSU AGAL_ECOLI LPLD_BACSU
Subfamily: Codes involving 6 elements
Subfamily True positives..
O88026
PROTEIN TITLES
GLVG_BACSU MALTOSE-6'-PHOSPHATE GLUCOSIDASE (EC 3.2.1.122) (6-PHOSPHO-A
GLVG_ECOLI PROBABLE 6-PHOSPHO-BETA-GLUCOSIDASE (EC 3.2.1.86) - ESCHERIC
MALH_FUSMR MALTOSE-6'-PHOSPHATE GLUCOSIDASE (EC 3.2.1.122) (6-PHOSPHO-A
CELF_BACSU PROBABLE 6-PHOSPHO-BETA-GLUCOSIDASE (EC 3.2.1.86) - BACILLUS
CELF_ECOLI 6-PHOSPHO-BETA-GLUCOSIDASE (EC 3.2.1.86) - ESCHERICHIA COLI.
AGAL_BACSU ALPHA-GALACTOSIDASE (EC 3.2.1.22) (MELIBIASE) - BACILLUS SUB
AGAL_ECOLI ALPHA-GALACTOSIDASE (EC 3.2.1.22) (MELIBIASE) - ESCHERICHIA
LPLD_BACSU LPLD PROTEIN - BACILLUS SUBTILIS.
O88026 PUTATIVE GLUCOSIDASE - STREPTOMYCES COELICOLOR.
SCAN HISTORY
OWL29_3 1 100 NSINGLE
SPTR37_9f 2 14 NSINGLE
INITIAL MOTIF SETS
GLHYDRLASE41 Length of motif = 16 Motif number = 1
Glycosyl hydrolase family 4 motif I - 1
PCODE ST INT
KIVTIGGGSSYTPELV CELF_BACSU 6 6
KVVTIGGGSSYTPELL CELF_ECOLI 6 6
KVVTIGGGSSYTPELL D908165 6 6
SIVIAGGGSTFTPGIV GLVG_BACSU 7 7
SVVVAGGGSTFTPGIV GLVG_ECOLI 5 5
KIAYIGGGSQGWARSL LPLD_BACSU 11 11
KITFIGAGSTIFVKNI AGAL_ECOLI 6 6
GLHYDRLASE42 Length of motif = 17 Motif number = 2
Glycosyl hydrolase family 4 motif II - 1
PCODE ST INT
ALKDADFVTTQFRVGLL CELF_BACSU 77 55
ALKDADFVTTQLRVGQL CELF_ECOLI 77 55
ALKDADFVTTQLRVGQL D908165 77 55
AFTDVDFVMAHIRVGKY GLVG_BACSU 76 53
AFSDVDFVMAHIRVGKY GLVG_ECOLI 74 53
ALSAADIVIISILPGSL LPLD_BACSU 76 49
ALEDADFVVVAFQIGGY AGAL_ECOLI 75 53
GLHYDRLASE43 Length of motif = 14 Motif number = 3
Glycosyl hydrolase family 4 motif III - 1
PCODE ST INT
KDERIPLKYGVIGQ CELF_BACSU 98 4
LDERIPLSHGYLGQ CELF_ECOLI 98 4
LDERIPLSHGYLGQ D908165 98 4
LDEQIPLKYGVVGQ GLVG_BACSU 97 4
LDEKIPLRHGVVGQ GLVG_ECOLI 95 4
VDVHLPERCGIYQS LPLD_BACSU 97 4
TDFEVCKRHGLEQT AGAL_ECOLI 97 5
GLHYDRLASE44 Length of motif = 21 Motif number = 4
Glycosyl hydrolase family 4 motif IV - 1
PCODE ST INT
ETNGPGGLFKGLRTIPVILEI CELF_BACSU 112 0
ETNGAGGLFKGLRTIPVIFDI CELF_ECOLI 112 0
ETNGAGGLFKGLRTIPVIFDI D908165 112 0
ETCGPGGIAYGMRSIGGVLEI GLVG_BACSU 111 0
ETCGPGGIAYGMRSIGGVLEL GLVG_ECOLI 109 0
DTVGPGGIIRGLRAVPIFAEI LPLD_BACSU 113 2
DTLGPGGIMRALRTIPHLWQI AGAL_ECOLI 113 2
GLHYDRLASE45 Length of motif = 18 Motif number = 5
Glycosyl hydrolase family 4 motif V - 1
PCODE ST INT
PNAWLVNFTNPAGMVTEA CELF_BACSU 141 8
PNAWVINFTNPAGMVTEA CELF_ECOLI 141 8
PNAWVINFTNPAGMVTEA D908165 141 8
PDAWMLNYSNPAAIVAEA GLVG_BACSU 140 8
PNAWMLNYSNPAAIVAEA GLVG_ECOLI 138 8
PESWVINYTNPMYVCTRV LPLD_BACSU 142 8
PDATMLNYVNPMAMNTWA AGAL_ECOLI 142 8
GLHYDRLASE46 Length of motif = 12 Motif number = 6
Glycosyl hydrolase family 4 motif VI - 1
PCODE ST INT
KVVGLCNVPIGI CELF_BACSU 167 8
RFIGVCNIPIGM CELF_ECOLI 167 8
RFIGVCNIPIGM D908165 167 8
KILNICDMPVGI GLVG_BACSU 166 8
KILNICDMPIGI GLVG_ECOLI 164 8
KAIGCCHEVFGT LPLD_BACSU 168 8
KQVGLCHSVQGT AGAL_ECOLI 168 8
GLHYDRLASE48 Length of motif = 13 Motif number = 7
Glycosyl hydrolase family 4 motif VII - 1
PCODE ST INT
VEVQFAGLNHMVF CELF_BACSU 193 14
LSIDLFGLNHMVF CELF_ECOLI 194 15
LSIDLFGLNHMVF D908165 194 15
MKVRYYGLNHFGW GLVG_BACSU 193 15
MRVRYYGLNHWWS GLVG_ECOLI 191 15
IRVNVLGINHFTW LPLD_BACSU 201 21
LRYRCAGINHMAF AGAL_ECOLI 194 14
FINAL MOTIF SETS
GLHYDRLASE41 Length of motif = 16 Motif number = 1
Glycosyl hydrolase family 4 motif I - 2
PCODE ST INT
SIVIAGGGSTFTPGIV GLVG_BACSU 7 7
SVVVAGGGSTFTPGIV GLVG_ECOLI 5 5
SILIAGGGSTFTPGII MALH_FUSMR 5 5
KIVTIGGGSSYTPELV CELF_BACSU 6 6
KVVTIGGGSSYTPELL CELF_ECOLI 6 6
KITFIGAGSTIFAKNV AGAL_BACSU 3 3
KITFIGAGSTIFVKNI AGAL_ECOLI 6 6
KIAYIGGGSQGWARSL LPLD_BACSU 11 11
GLHYDRLASE42 Length of motif = 17 Motif number = 2
Glycosyl hydrolase family 4 motif II - 2
PCODE ST INT
AFTDVDFVMAHIRVGKY GLVG_BACSU 76 53
AFSDVDFVMAHIRVGKY GLVG_ECOLI 74 53
AFTDIDFVMAHIRVGKY MALH_FUSMR 74 53
ALKDADFVTTQFRVGLL CELF_BACSU 77 55
ALKDADFVTTQLRVGQL CELF_ECOLI 77 55
ALQNAGYVINAIQVGGY AGAL_BACSU 72 53
ALEDADFVVVAFQIGGY AGAL_ECOLI 75 53
ALSAADIVIISILPGSL LPLD_BACSU 76 49
GLHYDRLASE43 Length of motif = 14 Motif number = 3
Glycosyl hydrolase family 4 motif III - 2
PCODE ST INT
LDEQIPLKYGVVGQ GLVG_BACSU 97 4
LDEKIPLRHGVVGQ GLVG_ECOLI 95 4
LDEKIPLRHGVVGQ MALH_FUSMR 95 4
KDERIPLKYGVIGQ CELF_BACSU 98 4
LDERIPLSHGYLGQ CELF_ECOLI 98 4
IDFEIPKRYGLRQT AGAL_BACSU 94 5
TDFEVCKRHGLEQT AGAL_ECOLI 97 5
VDVHLPERCGIYQS LPLD_BACSU 97 4
GLHYDRLASE44 Length of motif = 21 Motif number = 4
Glycosyl hydrolase family 4 motif IV - 2
PCODE ST INT
ETCGPGGIAYGMRSIGGVLEI GLVG_BACSU 111 0
ETCGPGGIAYGMRSIGGVLEL GLVG_ECOLI 109 0
ETCGPGGIAYGMRSIGGVIGL MALH_FUSMR 109 0
ETNGPGGLFKGLRTIPVILEI CELF_BACSU 112 0
ETNGAGGLFKGLRTIPVIFDI CELF_ECOLI 112 0
DTVGIGGIFRSLRTIPVLFDI AGAL_BACSU 110 2
DTLGPGGIMRALRTIPHLWQI AGAL_ECOLI 113 2
DTVGPGGIIRGLRAVPIFAEI LPLD_BACSU 113 2
GLHYDRLASE45 Length of motif = 18 Motif number = 5
Glycosyl hydrolase family 4 motif V - 2
PCODE ST INT
PDAWMLNYSNPAAIVAEA GLVG_BACSU 140 8
PNAWMLNYSNPAAIVAEA GLVG_ECOLI 138 8
PNAWMLNYSNPAAIVAEA MALH_FUSMR 138 8
PNAWLVNFTNPAGMVTEA CELF_BACSU 141 8
PNAWVINFTNPAGMVTEA CELF_ECOLI 141 8
PDAWFLNYTNPMATLTGA AGAL_BACSU 139 8
PDATMLNYVNPMAMNTWA AGAL_ECOLI 142 8
PESWVINYTNPMSVCTRV LPLD_BACSU 142 8
GLHYDRLASE46 Length of motif = 12 Motif number = 6
Glycosyl hydrolase family 4 motif VI - 2
PCODE ST INT
KILNICDMPVGI GLVG_BACSU 166 8
KILNICDMPIGI GLVG_ECOLI 164 8
KVLNICDMPIGI MALH_FUSMR 164 8
KVVGLCNVPIGI CELF_BACSU 167 8
RFIGVCNIPIGM CELF_ECOLI 167 8
KTIGLCHSVQVC AGAL_BACSU 164 7
KQVGLCHSVQGT AGAL_ECOLI 168 8
KAIGCCHEVFGT LPLD_BACSU 168 8
GLHYDRLASE47 Length of motif = 13 Motif number = 7
Glycosyl hydrolase family 4 motif VII - 2
PCODE ST INT
MKVRYYGLNHFGW GLVG_BACSU 193 15
MRVRYYGLNHWWS GLVG_ECOLI 191 15
MDIMYYGLNHFGW MALH_FUSMR 191 15
VEVQFAGLNHMVF CELF_BACSU 193 14
LSIDLFGLNHMVF CELF_ECOLI 194 15
IEERIAGINHMAW AGAL_BACSU 190 14
LRYRCAGINHMAF AGAL_ECOLI 194 14
IRVNVLGINHFTW LPLD_BACSU 201 21
User query: Display/Full Code "GLHYDRLASE4"