WORKLIST ENTRIES (1):
GLHYDRLASE41 View alignment Glycosyl hydrolase family 41 signature
Type of fingerprint: COMPOUND with 7 elements
Links:
PRINTS; PR00131 GLHYDRLASE1; PR00132 GLHYDRLASE2; PR00133 GLHYDRLASE3
PRINTS; PR00732 GLHYDRLASE4; PR00733 GLHYDRLASE6; PR00734 GLHYDRLASE7
PRINTS; PR00735 GLHYDRLASE8; PR00134 GLHYDRLASE10; PR00911 GLHYDRLASE11
PRINTS; PR00736 GLHYDRLASE15; PR00737 GLHYDRLASE16; PR00738 GLHYDRLASE20
PRINTS; PR00739 GLHYDRLASE26; PR00740 GLHYDRLASE27; PR00843 GLHYDRLASE30
PRINTS; PR00741 GLHYDRLASE29; PR00742 GLHYDRLASE35; PR00743 GLHYDRLASE36
PRINTS; PR00744 GLHYDRLASE37; PR00745 GLHYDRLASE39; PR00747 GLHYDRLASE47
PRINTS; PR00844 GLHYDRLASE48; PR00845 GLHYDRLASE52; PR00846 GLHYDRLASE56
PRINTS; PR00849 GLHYDRLASE58; PR00850 GLHYDRLASE59; PR00748 MELIBIASE
PRINTS; PR00137 LYSOZYME; PR00684 T4LYSOZYME; PR00749 LYSOZYMEG
PRINTS; PR00110 ALPHAAMYLASE; PR00750 BETAAMYLASE
INTERPRO; IPR000624
Creation date 13-JUN-1997; UPDATE 07-JUN-1999
1. HENRISSAT, B. AND BAIROCH, A.
New families in the classification of glycosyl hydrolases based on amino
acid sequence similarities.
BIOCHEM.J. 293 781-788 (1993).
2. HENRISSAT, B.
A classification of glycosyl hydrolases based on amino acid sequence
similarities.
BIOCHEM.J. 280 309-316 (1991).
3. DAVIES, G. AND HENRISSAT, B.
Structures and mechanisms of glycosyl hydrolases.
STRUCTURE 3 853-859 (1995).
4. HENRISSAT, B. AND BAIROCH, A.
Updating the sequence-based classification of glycosyl hydrolases.
BIOCHEM.J. 316 695-696 (1996).
5. ESTRUCH, J.J., CHRIQUI, D., GROSSMANN, K., SCHELL, J. AND SPENA, A.
The plant oncogene rolC is responsible for the release of cytokinins
from glucoside conjugates.
EMBO J. 10(10) 2889-2895 (1991).
6.TANAKA, N., IKEDA, T. AND OKA, A.
Nucleotide sequence of the rol region of the mikimopine-type root-inducing
plasmid pri1724.
BIOSCI.BIOTECHNOL.BIOCHEM. 58(3) 548-551 (1994).
O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that
hydrolyse the glycosidic bond between two or more carbohydrates, or between
a carbohydrate and a non-carbohydrate moiety. A classification system for
glycosyl hydrolases, based on sequence similarity, has led to the definition
of up to 60 different families [1-4] (http://expasy.hcuge.ch/cgi-bin/lists?
glycosid.txt).
Family 41 encompasses cytokinin-beta-glucosidases. These enzymes hydrolyse
cytokinin glucosides, liberating free cytokinins [5] and contribute to root-
inducing activity [6].
GLHYDRLASE41 is a 7-element fingerprint that provides a signature for
family 41 glycosyl hydrolases. The fingerprint was derived from an initial
alignment of 3 sequences: the motifs were drawn from conserved regions
spanning virtually the full alignment length. Two iterations on OWL29.3
were required to reach convergence, at which point a true set comprising
6 sequences was identified.
An update on SPTR37_9f identified a true set of 6 sequences.
SUMMARY INFORMATION
6 codes involving 7 elements
0 codes involving 6 elements
0 codes involving 5 elements
0 codes involving 4 elements
0 codes involving 3 elements
0 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
7| 6 6 6 6 6 6 6
6| 0 0 0 0 0 0 0
5| 0 0 0 0 0 0 0
4| 0 0 0 0 0 0 0
3| 0 0 0 0 0 0 0
2| 0 0 0 0 0 0 0
--+------------------------------------
| 1 2 3 4 5 6 7
True positives..
ROLC_NICGL ROLC_AGRRB Q44183 ROLC_AGRRA
Q44194 Q43592
PROTEIN TITLES
ROLC_NICGL CYTOKININ-BETA-GLUCOSIDASE (EC 3.2.1.-) (ROL C PROTEIN) - NI
ROLC_AGRRB CYTOKININ-BETA-GLUCOSIDASE (EC 3.2.1.-) (ROL C PROTEIN) - AG
Q44183 CALLED ORF12 BY HOMOLOGY WITH T-DNA OF PRIA4 - AGROBACTERIUM
ROLC_AGRRA CYTOKININ-BETA-GLUCOSIDASE (EC 3.2.1.-) (ROL C PROTEIN) - AG
Q44194 ORF12 - AGROBACTERIUM RHIZOGENES.
Q43592 TROLC GENE - NICOTIANA TABACUM (COMMON TOBACCO).
SCAN HISTORY
OWL29_3 2 100 NSINGLE
SPTR37_9f 2 7 NSINGLE
INITIAL MOTIF SETS
GLHYDRLASE411 Length of motif = 23 Motif number = 1
Glycosyl hydrolase family 41 motif I - 1
PCODE ST INT
DLCALFFNLRVKDVTSSDELKKH ROLC_NICGL 5 5
DLCALFSSLKVGDVSSSDELKKH ROLC_AGRRB 5 5
DLCSLFFKLKVEDVTSSDELARH ROLC_AGRRA 5 5
GLHYDRLASE412 Length of motif = 21 Motif number = 2
Glycosyl hydrolase family 41 motif II - 1
PCODE ST INT
ERNPLTEPGENQSMDVDEEGG ROLC_NICGL 34 6
ERTPLTEPGEGQSMDIDEEGG ROLC_AGRRB 34 6
ERKPLIEPGENQSMDIDEEGG ROLC_AGRRA 34 6
GLHYDRLASE413 Length of motif = 18 Motif number = 3
Glycosyl hydrolase family 41 motif III - 1
PCODE ST INT
GILYLYVDCPTMMQCFYG ROLC_NICGL 59 4
GILYLYVDCPTMMRCFYG ROLC_AGRRB 59 4
GLLYLYVDCPTMMLCFYG ROLC_AGRRA 59 4
GLHYDRLASE414 Length of motif = 19 Motif number = 4
Glycosyl hydrolase family 41 motif IV - 1
PCODE ST INT
PYNSRHGALLTNLPPYQKD ROLC_NICGL 80 3
PYNSRHGALITNLPPYQKD ROLC_AGRRB 80 3
PYNWMQGALLTNLPPYQHD ROLC_AGRRA 80 3
GLHYDRLASE415 Length of motif = 17 Motif number = 5
Glycosyl hydrolase family 41 motif V - 1
PCODE ST INT
RGLRQASGFFGYEDPIR ROLC_NICGL 106 7
RGLRQASGFFGYEDVIR ROLC_AGRRB 106 7
RGLRQASGFFGYADPMR ROLC_AGRRA 106 7
GLHYDRLASE416 Length of motif = 17 Motif number = 6
Glycosyl hydrolase family 41 motif VI - 1
PCODE ST INT
SAYFAALSFPGHVAKLD ROLC_NICGL 123 0
SAYFAALSVPGYFVKLD ROLC_AGRRB 123 0
SAYFAAFSFPGRVIKLN ROLC_AGRRA 123 0
GLHYDRLASE417 Length of motif = 19 Motif number = 7
Glycosyl hydrolase family 41 motif VII - 1
PCODE ST INT
QMELTSTNGESLTFDLYAS ROLC_NICGL 141 1
QMELTSTKGKSLTFDLYAS ROLC_AGRRB 141 1
QMELTSTKGKCLTFDLYAS ROLC_AGRRA 141 1
FINAL MOTIF SETS
GLHYDRLASE411 Length of motif = 23 Motif number = 1
Glycosyl hydrolase family 41 motif I - 2
PCODE ST INT
DLCALFFNLRVKDVTSSDELKKH ROLC_NICGL 5 5
DLCALFSSLKVGDVSSSDELKKH ROLC_AGRRB 5 5
DLCALFSSLKVGDVSSSDELKKH Q44183 5 5
DLCSLFFKLKVEDVTSSDELARH ROLC_AGRRA 5 5
DLCALFSNLRVKDVASSDELMKH Q44194 5 5
NLCALFFKLTVQGVTCSDGLKKH Q43592 5 5
GLHYDRLASE412 Length of motif = 21 Motif number = 2
Glycosyl hydrolase family 41 motif II - 2
PCODE ST INT
ERNPLTEPGENQSMDVDEEGG ROLC_NICGL 34 6
ERTPLTEPGEGQSMDIDEEGG ROLC_AGRRB 34 6
ERTPLTEPGEGQSMDVDEEGG Q44183 34 6
ERKPLIEPGENQSMDIDEEGG ROLC_AGRRA 34 6
ERVSLIELGENPSMDIDEEHP Q44194 34 6
LKPLLEHGPQGESMDIDEEEV Q43592 35 7
GLHYDRLASE413 Length of motif = 18 Motif number = 3
Glycosyl hydrolase family 41 motif III - 2
PCODE ST INT
GILYLYVDCPTMMQCFYG ROLC_NICGL 59 4
GILYLYVDCPTMMRCFYG ROLC_AGRRB 59 4
GILYLYVDCPTMMRCFYG Q44183 59 4
GLLYLYVDCPTMMLCFYG ROLC_AGRRA 59 4
ETLFLYVDCPTMMQCFYG Q44194 59 4
RLLYLYVDCPTMMRCFFG Q43592 60 4
GLHYDRLASE414 Length of motif = 19 Motif number = 4
Glycosyl hydrolase family 41 motif IV - 2
PCODE ST INT
PYNSRHGALLTNLPPYQKD ROLC_NICGL 80 3
PYNSRHGALITNLPPYQKD ROLC_AGRRB 80 3
PYNSTHGALITNLPPYQKD Q44183 80 3
PYNWMQGALLTNLPPYQHD ROLC_AGRRA 80 3
PYNSTHGALLTNLPPYQKN Q44194 80 3
PYNCRGGTLLTDLPPYHAD Q43592 81 3
GLHYDRLASE415 Length of motif = 17 Motif number = 5
Glycosyl hydrolase family 41 motif V - 2
PCODE ST INT
RGLRQASGFFGYEDPIR ROLC_NICGL 106 7
RGLRQASGFFGYEDVIR ROLC_AGRRB 106 7
RGLRQASGFFGYEDVIR Q44183 106 7
RGLRQASGFFGYADPMR ROLC_AGRRA 106 7
RGLREASGFVGYEDPIR Q44194 106 7
RGLGKATDFFSYEDAIR Q43592 107 7
GLHYDRLASE416 Length of motif = 17 Motif number = 6
Glycosyl hydrolase family 41 motif VI - 2
PCODE ST INT
SAYFAALSFPGHVAKLD ROLC_NICGL 123 0
SAYFAALSVPGYFVKLD ROLC_AGRRB 123 0
SAYFAALSVPGYFVKLD Q44183 123 0
SAYFAAFSFPGRVIKLN ROLC_AGRRA 123 0
SAYFAALSFPGHVAKLD Q44194 123 0
SAYFAAFSFSGPVRKLD Q43592 124 0
GLHYDRLASE417 Length of motif = 19 Motif number = 7
Glycosyl hydrolase family 41 motif VII - 2
PCODE ST INT
QMELTSTNGESLTFDLYAS ROLC_NICGL 141 1
QMELTSTKGKSLTFDLYAS ROLC_AGRRB 141 1
QMELTSTKGKSLTFDLYAS Q44183 141 1
QMELTSTKGKCLTFDLYAS ROLC_AGRRA 141 1
QLRLTSTDGETLIFDLYAT Q44194 141 1
QLELTSTRGEPLTFSLYAR Q43592 142 1
User query: Display/Full Code "GLHYDRLASE41"