WORKLIST ENTRIES (1):
KVCHANNEL View alignment Voltage-gated potassium channel family signature
Type of fingerprint: COMPOUND with 4 elements
Links:
PRINTS; PR00169 KCHANNEL; PR01492 KV6CHANNEL; PR01493 KV8CHANNEL
PRINTS; PR01494 KV9CHANNEL; PR01495 SHABCHANNEL; PR01496 SHAKERCHANEL
PRINTS; PR01497 SHALCHANNEL; PR01498 SHAWCHANNEL; PR01577 KCNABCHANEL
PFAM; PF00520 ion_trans
PROSITE; PS50265 CHANNEL_PORE_K
INTERPRO; IPR003091
Creation date 09-DEC-2000
1. MILLER, C.
An overview of the potassium channel family.
GENOME BIOL. 1(4) 1-5 (2000).
2. ASHCROFT, F.M.
Voltage-gated K+ channels.
IN ION CHANNELS AND DISEASE, ACADEMIC PRESS, 2000, PP.97-123.
3. SANSOM, M.S.
Putting the parts together.
CURR.BIOL. 9(19) R738-R741 (1999).
Potassium ion (K+) channels are a structurally diverse group of proteins
that facilitate the flow of K+ ions across cell membranes. They are
ubiquitous, being present in virtually all cell types. Activation of K+
channels tends to hyperpolarise cells, reducing the membrane's electrical
resistance, dampening nervous activity. In eukaryotic cells, K+ channels
are involved in neural signalling and generation of the cardiac rhythm, and
act as effectors in signal transduction pathways involving G protein-
coupled receptors (GPCRs). In prokaryotic cells, they play a role in the
maintenance of ionic homeostasis [1].
Structurally, Kv channels belong to the subfamily of K+ channels whose
subunits contain 6 transmembrane (TM) domains: these are the voltage-
gated K+ (Kv) channels, the KCNQ channels, the EAG-like K+ channels and
3 kinds of Ca2+-activated K+ channels (BK, IK and SK) [2]. All K+
channels share a characteristic sequence feature: a TMxTVGYG motif
that resides between the 2 C-terminal membrane spanning helices, and
forms the K+-selective pore domain [1-2].
The Kv family can be divided into 4 subfamilies on the basis of sequence
similarity and function: Shaker (Kv1), Shab (Kv2), Shaw (Kv3) and Shal
(Kv4). All consist of pore-forming alpha subunits that associate with
different types of beta subunit. To form a functional K+ channel pore,
4 alpha subunits and 4 beta subunits are required. The alpha subunits
have 6 well-conserved TM domains, a pore loop region and variable length
N- and C-termini. TM domains 5 and 6, and the loop region, form the K+
channel pore through which the K+ ions pass [3].
KVCHANNEL is a 4-element fingerprint that provides a signature for the
voltage-gated potassium channel family. The fingerprint was derived from an
initial alignment of 26 sequences: the motifs were drawn from conserved
regions spanning virtually the full alignment length, focusing on those
sections that characterise Kv channels but distinguish them from the rest
of the K+ channel family - motif 1 spans putative TM domain 1; motif 2 lies
within TM domain 4; motif 3 lies in the loop between the TM domains 4 and 5;
and motif 4 spans TM domain 6. Five iterations on SPTR39_14f were required
to reach convergence, at which point a true set comprising 120 sequences was
identified. Several partial matches were also found, all but one of which
are related potassium channel sequences that fail to make significant
matches with one or more motifs.
SUMMARY INFORMATION
120 codes involving 4 elements
6 codes involving 3 elements
3 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
4| 120 120 120 120
3| 6 5 2 5
2| 2 3 0 1
--+---------------------
| 1 2 3 4
True positives..
CIK1_HUMAN Q9Z1R6 Q9YGX8 Q9TS07
Q91781 Q61923 Q28649 Q16968
Q16322 CIK6_RAT CIK6_HUMAN CIK5_RAT
CIK5_RABIT CIK5_MUSPF CIK5_MOUSE CIK5_HUMAN
CIK4_RAT CIK4_MUSPF CIK4_MOUSE CIK4_HUMAN
CIK4_BOVIN CIK3_RAT CIK3_MOUSE CIK3_HUMAN
CIK2_XENLA CIK2_MOUSE CIK2_HUMAN CIK1_RAT
CIK1_MOUSE O61335 Q9XXX0 CIK1_DROME
Q9VWZ9 CIK4_DROME CIK2_DROME O70259
Q28656 Q26597 Q25376 Q28293
O08723 Q9Z0V1 Q9Z0V0 Q9UK17
Q9UK16 Q9UH86 Q9UH85 Q9TTT5
Q9PTD3 Q63286 Q62897 P70622
O60577 O60576 CIKA_HUMAN Q9QUU4
Q91593 Q91592 Q14193 Q03717
O18868 CIKB_RAT CIKB_HUMAN CIKB_CANFA
CIKA_RAT O75671 Q03719 CIKL_DROME
Q9VW11 Q26040 CIKW_DROME Q26041
Q26095 Q63881 Q9Z0V2 Q9UNH9
Q9UBY7 Q99249 P91784 O57662
O18476 O76457 Q9VLC6 O97045
CIKB_DROME O76805 CIKD_HUMAN Q9XSJ8
CIKG_RAT CIKG_HUMAN CIKF_RAT CIKF_MOUSE
CIKF_HUMAN CIKE_RAT CIKD_RAT CIKD_MOUSE
Q26344 Q9PVD1 Q19464 O62350
Q22012 Q26094 Q09658 O43651
Q9TT17 O88759 O54900 O43527
P97557 Q9UHJ4 Q60565 O35174
O35173 O88758 O43652 O43528
Q9UIX4 O73606 Q9QYU3 Q9UJ96
Subfamily: Codes involving 3 elements
Subfamily True positives..
P91783 Q16976 O76266 Q9XXD1
P91256 Q20381
Subfamily: Codes involving 2 elements
Subfamily True positives..
Q9PWM8 Q09937
PROTEIN TITLES
CIK1_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.1 (HUKI) (HBK1)
Q9Z1R6 VENTRICULAR POTASSIUM CHANNEL KV1.5 - Mus musculus (Mouse).
Q9YGX8 POTASSIUM CHANNEL SHAKER CKV1.4 - Gallus gallus (Chicken).
Q9TS07 BAK5=DELAYED RECTIFIER POTASSIUM CHANNEL KV1.5 HOMOLOG - Bos
Q91781 POTASSIUM CHANNEL - Xenopus laevis (African clawed frog).
Q61923 MURINE POTASSIUM CHANNEL PROTEIN - Mus musculus (Mouse).
Q28649 CGMP-GATED POTASSIUM CHANNEL - Oryctolagus cuniculus (Rabbit
Q16968 POTASSIUM CHANNEL - Aplysia californica (California sea hare
Q16322 CYCLIC GMP GATED POTASSIUM CHANNEL - Homo sapiens (Human).
CIK6_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.6 (RCK2) (KV2) -
CIK6_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.6 (HBK2) - Homo
CIK5_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.5 (KV1) (RCK7) -
CIK5_RABIT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.5 - Oryctolagus
CIK5_MUSPF VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.5 - Mustela puto
CIK5_MOUSE VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.5 (KV1-5) - Mus
CIK5_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.5 (HK2) (HPCN1)
CIK4_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.4 (RCK4) (RHK1)
CIK4_MUSPF VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.4 (FK1) - Mustel
CIK4_MOUSE VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.4 - Mus musculus
CIK4_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.4 (HK1) (HPCN2)
CIK4_BOVIN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.4 (BAK4) - Bos t
CIK3_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.3 (RGK5) (RCK3)
CIK3_MOUSE VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.3 (MK3) - Mus mu
CIK3_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.3 (HPCN3) (HGK5)
CIK2_XENLA VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.2 (XSHA2) - Xeno
CIK2_MOUSE VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.2 (RBK2) (RCK5)
CIK2_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.2 (RBK2) (HBK5)
CIK1_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.1 (IA) (RBK1) (R
CIK1_MOUSE VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.1 (MK1) (MBK1) -
O61335 POTASSIUM CHANNEL - Panulirus interruptus (California spiny
Q9XXX0 TUKVI - Halocynthia roretzi (Sea squirt).
CIK1_DROME VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN, ADULT (SHAKER-ALPHA
Q9VWZ9 SH GENE PRODUCT - Drosophila melanogaster (Fruit fly).
CIK4_DROME VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN, LARVAL (SHAKER-EPSI
CIK2_DROME VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN, LATE POPULATION (SH
O70259 VOLTAGE-GATED POTASSIUM CHANNEL KV1.7 - Mus musculus (Mouse)
Q28656 GLIBENCLAMIDE-SENSITIVE VOLTAGE-GATED POTASSIUM CHANNEL - Or
Q26597 POTASSIUM CHANNEL PROTEIN - Schistosoma mansoni (Blood fluke
Q25376 VOLTAGE-DEPENDENT POTASSIUM CHANNEL SQKV1A - Loligo opalesce
Q28293 DELAYED RECTIFIER K+ CHANNEL - Canis familiaris (Dog).
O08723 KV4.3 - Rattus norvegicus (Rat).
Q9Z0V1 POTASSIUM CHANNEL KV4.3L - Mus musculus (Mouse).
Q9Z0V0 POTASSIUM CHANNEL KV4.3M - Mus musculus (Mouse).
Q9UK17 VOLTAGE GATED POTASSIUM CHANNEL KV4.3 LONG SPLICE VARIANT -
Q9UK16 VOLTAGE GATED POTASSIUM CHANNEL KV4.3 SHORT SPLICE VARIANT -
Q9UH86 POTASSIUM IONIC CHANNEL KV4.3 SHORT ISOFORM - Homo sapiens (
Q9UH85 POTASSIUM IONIC CHANNEL KV4.3 LONG ISOFORM - Homo sapiens (H
Q9TTT5 POTASSIUM CHANNEL KV4.3 - Oryctolagus cuniculus (Rabbit).
Q9PTD3 POTASSIUM CHANNEL KV4.3 - Gallus gallus (Chicken).
Q63286 VOLTAGE-GATED K+ CHANNEL - Rattus norvegicus (Rat).
Q62897 SHAL-RELATED POTASSIUM CHANNEL KV4.3 - Rattus norvegicus (Ra
P70622 KV4.3 POTASSIUM CHANNEL - Rattus norvegicus (Rat).
O60577 KV4.3 POTASSIUM CHANNEL LONG SPLICE VARIANT - Homo sapiens (
O60576 KV4.3 POTASSIUM CHANNEL SHORT SPLICE VARIANT - Homo sapiens
CIKA_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV2.1 (DHK1) - Homo
Q9QUU4 K+ CHANNEL, DRK1 - Rattus sp.
Q91593 POTASSIUM CHANNEL ALPHA SUBUNIT KV2.1 - Xenopus laevis (Afri
Q91592 POTASSIUM CHANNEL ALPHA SUBUNIT KV2.2 - Xenopus laevis (Afri
Q14193 H-DRK1 K(+) CHANNEL - Homo sapiens (Human).
Q03717 POTASSIUM CHANNEL PROTEIN - Mus musculus (Mouse).
O18868 DELAYED RECTIFIER POTASSIUM CHANNEL KV2.1 - Sus scrofa (Pig)
CIKB_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV2.2 (CDRK) - Rattu
CIKB_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV2.2 - Homo sapiens
CIKB_CANFA VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV2.2 - Canis famili
CIKA_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV2.1 (DRK1) - Rattu
O75671 SHAL-TYPE POTASSIUM CHANNEL - Homo sapiens (Human).
Q03719 POTASSIUM CHANNEL PROTEIN - Mus musculus (Mouse).
CIKL_DROME VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN SHAL (SHAL2) - Droso
Q9VW11 SHAL PROTEIN - Drosophila melanogaster (Fruit fly).
Q26040 SHAL 1 POTASSIUM CHANNEL - Panulirus interruptus (California
CIKW_DROME VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN SHAW (SHAW2) - Droso
Q26041 SHAW POTASSIUM CHANNEL - Panulirus interruptus (California s
Q26095 POTASSIUM CHANNEL HOMOLOG - Polyorchis penicillatus (Hydrome
Q63881 SHAL1 - Rattus norvegicus (Rat).
Q9Z0V2 POTASSIUM CHANNEL KV4.2 - Mus musculus (Mouse).
Q9UNH9 POTASSIUM CHANNEL KV4.2 - Homo sapiens (Human).
Q9UBY7 POTASSIUM CHANNEL KV4.2 - Homo sapiens (Human).
Q99249 POTASSIUM CHANNEL PROTEIN RK5 - Rattus norvegicus (Rat).
P91784 POTASSIUM CHANNEL ALPHA SUBUNIT - Polyorchis penicillatus (H
O57662 POTASSIUM CHANNEL XKV4.3 - Xenopus laevis (African clawed fr
O18476 KV2 VOLTAGE-GATED POTASSIUM CHANNEL - Loligo pealeii (Longfi
O76457 SHAW POTASSIUM CHANNEL KV3.1A - Aplysia californica (Califor
Q9VLC6 CG4450 PROTEIN - Drosophila melanogaster (Fruit fly).
O97045 KV2 CHANNEL ALPHA-SUBUNIT - Halocynthia roretzi (Sea squirt)
CIKB_DROME VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN SHAB (SHAB11) - Dros
O76805 DELAYED RECTIFIER POTASSIUM CHANNEL - Drosophila melanogaste
CIKD_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.1 (KV4) (NGK2) -
Q9XSJ8 KV3.1 - Canis familiaris (Dog).
CIKG_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.4 (RAW3) - Rattu
CIKG_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.4 (KSHIIIC) - Ho
CIKF_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.3 (KSHIIID) - Ra
CIKF_MOUSE VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.3 (KSHIIID) - Mu
CIKF_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.3 (KSHIIID) - Ho
CIKE_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.2 (KSHIIIA) - Ra
CIKD_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.1 (KV4) (NGK2) (
CIKD_MOUSE VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.1 (KV4) (NGK2) -
Q26344 ACTION POTENTIAL BROADENING POTASSIUM CHANNEL - Aplysia sp.
Q9PVD1 KV3.1 POTASSIUM CHANNEL - Xenopus laevis (African clawed fro
Q19464 F14F11.1 PROTEIN - Caenorhabditis elegans.
O62350 EGL-36 PROTEIN - Caenorhabditis elegans.
Q22012 R186.5 PROTEIN - Caenorhabditis elegans.
Q26094 POTASSIUM CHANNEL HOMOLOG - Polyorchis penicillatus (Hydrome
Q09658 PUTATIVE POTASSIUM CHANNEL PROTEIN ZK1321.2 IN CHROMOSOME II
O43651 SHAB-RELATED DELAYED-RECTIFIER K+ CHANNEL ALPHA SUBUNIT - Ho
Q9TT17 VOLTAGE-GATED DELAYED-RECTIFIER POTASSIUM CHANNEL KV9.3 - Or
O88759 POTASSIUM CHANNEL, ALPHA SUBUNIT - Rattus norvegicus (Rat).
O54900 SHAB-RELATED DELAYED-RECTIFIER K+ CHANNEL - Rattus norvegicu
O43527 POTASSIUM CHANNEL - Homo sapiens (Human).
P97557 NEURONAL POTASSIUM CHANNEL - Rattus norvegicus (Rat).
Q9UHJ4 NEURONAL POTASSIUM CHANNEL ALPHA SUBUNIT - Homo sapiens (Hum
Q60565 POTASSIUM CHANNEL KV8.1 - Mesocricetus auratus (Golden hamst
O35174 K+ VOLTAGE-GATED CHANNEL, SUBFAMILY S, 2 (POTASSIUM CHANNEL
O35173 K+ VOLTAGE-GATED CHANNEL, SUBFAMILY S, 1 (POTASSIUM CHANNEL
O88758 POTASSIUM CHANNEL, ALPHA SUBUNIT - Rattus norvegicus (Rat).
O43652 DELAYED-RECTIFIER K+ CHANNEL ALPHA SUBUNIT - Homo sapiens (H
O43528 POTASSIUM CHANNEL - Homo sapiens (Human).
Q9UIX4 DJ955M13.1 (POTASSIUM VOLTAGE-GATED CHANNEL, SUBFAMILY G, ME
O73606 SHAB-LIKE VOLTAGE-GATED POTASSIUM CHANNEL CKV6.2 - Gallus ga
Q9QYU3 CARDIAC POTASSIUM CHANNEL SUBUNIT (KV6.2) - Rattus rattus (b
Q9UJ96 CARDIAC POTASSIUM CHANNEL SUBUNIT (KV6.2) - Homo sapiens (Hu
P91783 POTASSIUM CHANNEL GAMMA SUBUNIT - Polyorchis penicillatus (H
Q16976 NONINACTIVATING POTASSIUM CHANNEL - Aplysia californica (Cal
O76266 VOLTAGE-GATED POTASSIUM-CHANNEL LKV1 - Hirudo medicinalis (M
Q9XXD1 Y48A6B.6 PROTEIN - Caenorhabditis elegans.
P91256 EXP-2 PROTEIN - Caenorhabditis elegans.
Q20381 SIMILAR TO POTASSIUM CHANNEL PROTEIN. NCBI GI: 1123042 - Cae
Q9PWM8 POTASSIUM CHANNEL SHAKER ALPHA SUBUNIT VARIANT CKV1.4(M) - G
Q09937 HYPOTHETICAL 53.8 KDA PROTEIN C53C9.3 IN CHROMOSOME X - Caen
SCAN HISTORY
SPTR39_14f 5 290 NSINGLE
INITIAL MOTIF SETS
KVCHANNEL1 Length of motif = 11 Motif number = 1
Voltage-gated potassium channel family motif I - 1
PCODE ST INT
EFFFDRNPSAF O73606 108 108
EYFFDRSSQAF Q60565 104 104
EYFFDRSSQAF Q9UHJ4 100 100
EFFFDRSPCAF Q9QYU3 82 82
EFFFDRSPCAF Q9UJ96 68 68
EYYFDRNPSLF Q9TT17 66 66
EFYFDRHPGFF O35173 70 70
KVCHANNEL2 Length of motif = 9 Motif number = 2
Voltage-gated potassium channel family motif II - 1
PCODE ST INT
YVMRLARHS O73606 345 226
RMLKLGRHS Q60565 325 210
RMLKLGRHS Q9UHJ4 321 210
YVMRLARHS Q9QYU3 310 217
YVMRLARHS Q9UJ96 297 218
RILKLARHS Q9TT17 299 222
RVLKLARHS O35173 323 242
KVCHANNEL3 Length of motif = 15 Motif number = 3
Voltage-gated potassium channel family motif III - 1
PCODE ST INT
EFGLLLLFLCVAMAL O73606 369 15
EVGLLLLFLSVGISI Q60565 349 15
EVGLLLLFLSVGISI Q9UHJ4 345 15
EFGLLLLFLCVAMAL Q9QYU3 334 15
EFGLLLLFLCVAMAL Q9UJ96 321 15
EVGLLLLFLSVGISI Q9TT17 323 15
EVGILLLYLAVGVSV O35173 347 15
KVCHANNEL4 Length of motif = 12 Motif number = 4
Voltage-gated potassium channel family motif IV - 1
PCODE ST INT
GILLMAFPVTSI O73606 441 57
GILVLALPIAII Q60565 420 56
GILVLALPIAII Q9UHJ4 416 56
GILLMAFPVTSI Q9QYU3 406 57
GILLMAFPVTSI Q9UJ96 393 57
GILVVALPITII Q9TT17 394 56
GILVVALPITII O35173 416 54
FINAL MOTIF SETS
KVCHANNEL1 Length of motif = 11 Motif number = 1
Voltage-gated potassium channel family motif I - 5
PCODE ST INT
EYFFDRNRPSF CIK1_HUMAN 79 79
EYFFDRNRPSF Q9Z1R6 153 153
EYFFDRNRPSF Q9YGX8 234 234
EYFFDRNRPSF Q9TS07 147 147
EYFFDRNRPSF Q91781 76 76
EYFFDRNRPSF Q61923 83 83
EYFFDRNRPSF Q28649 339 339
EYFFDRNRPSF Q16968 108 108
EYFFDRNRPSF Q16322 128 128
EYFFDRNRPSF CIK6_RAT 83 83
EYFFDRNRPSF CIK6_HUMAN 83 83
EYFFDRNRPSF CIK5_RAT 153 153
EYFFDRNRPSF CIK5_RABIT 146 146
EYFFDRNRPSF CIK5_MUSPF 151 151
EYFFDRNRPSF CIK5_MOUSE 153 153
EYFFDRNRPSF CIK5_HUMAN 162 162
EYFFDRNRPSF CIK4_RAT 220 220
EYFFDRNRPSF CIK4_MUSPF 219 219
EYFFDRNRPSF CIK4_MOUSE 219 219
EYFFDRNRPSF CIK4_HUMAN 218 218
EYFFDRNRPSF CIK4_BOVIN 226 226
EYFFDRNRPSF CIK3_RAT 96 96
EYFFDRNRPSF CIK3_MOUSE 99 99
EYFFDRNRPSF CIK3_HUMAN 94 94
EYFFDRNRPSF CIK2_XENLA 75 75
EYFFDRNRPSF CIK2_MOUSE 75 75
EYFFDRNRPSF CIK2_HUMAN 75 75
EYFFDRNRPSF CIK1_RAT 79 79
EYFFDRNRPSF CIK1_MOUSE 79 79
EYFFDRNRPSF O61335 96 96
EYFFDRNRPSF Q9XXX0 108 108
EYFFDRSRPSF CIK1_DROME 139 139
EYFFDRSRPSF Q9VWZ9 168 168
EYFFDRSRPSF CIK4_DROME 139 139
EYFFDRSRPSF CIK2_DROME 127 127
EYFFDRHRPSF O70259 133 133
EYFFDRNRPSF Q28656 87 87
EYFFDRNRSSF Q26597 93 93
EYFFDGNRPSF Q25376 82 82
EIFFVRNRPSF Q28293 75 75
EYFFDRDPEVF O08723 81 81
EYFFDRDPEVF Q9Z0V1 81 81
EYFFDRDPEVF Q9Z0V0 81 81
EYFFDRDPEVF Q9UK17 81 81
EYFFDRDPEVF Q9UK16 81 81
EYFFDRDPEVF Q9UH86 81 81
EYFFDRDPEVF Q9UH85 81 81
EYFFDRDPEVF Q9TTT5 81 81
EYFFDRDPEVF Q9PTD3 81 81
EYFFDRDPEVF Q63286 81 81
EYFFDRDPEVF Q62897 81 81
EYFFDRDPEVF P70622 81 81
EYFFDRDPEVF O60577 81 81
EYFFDRDPEVF O60576 81 81
EYFFDRHPGAF CIKA_HUMAN 78 78
EYFFDRHPGAF Q9QUU4 82 82
EYFFDRHPGAF Q91593 82 82
EYFFDRHPGAF Q91592 86 86
EYFFDRHPGAF Q14193 82 82
EYFFDRHPGAF Q03717 82 82
EYFFDRHPGAF O18868 82 82
EYFFDRHPGAF CIKB_RAT 86 86
EYFFDRHPGAF CIKB_HUMAN 86 86
EYFFDRHPGAF CIKB_CANFA 86 86
EYFFDRHPGAF CIKA_RAT 78 78
EYFFDRDPDMF O75671 81 81
EYFFDRDPDMF Q03719 81 81
EYFFDRDPDIF CIKL_DROME 82 82
EYFFDRDPDIF Q9VW11 82 82
EYFFDRDPDIF Q26040 82 82
EYFFDRHPGVF CIKW_DROME 52 52
EYFFDRHPGVF Q26041 47 47
EYFFDRHRKAF Q26095 96 96
QYFFDRDPDIF Q63881 82 82
QYFFDRDPDIF Q9Z0V2 82 82
QYFFDRDPDIF Q9UNH9 82 82
QYFFDRDPDIF Q9UBY7 82 82
QYFFDRDPDIF Q99249 82 82
EYYFDRDPDLF P91784 85 85
EYFFDRDPEVF O57662 81 81
EYFFDRHPRSF O18476 274 274
EYFFDRHPGVF O76457 52 52
EYFFDRHPGVF Q9VLC6 54 54
EMFFDRHPGAF O97045 121 121
EYFFDRHPKSF CIKB_DROME 328 328
EYFFDRHPKSF O76805 328 328
EFFFDRHPGVF CIKD_HUMAN 54 54
EFFFDRHPGVF Q9XSJ8 54 54
EFFFDRHPGVF CIKG_RAT 94 94
EFFFDRHPGVF CIKG_HUMAN 93 93
EFFFDRHPGVF CIKF_RAT 136 136
EFFFDRHPGVF CIKF_MOUSE 135 135
EFFFDRHPGVF CIKF_HUMAN 134 134
EFFFDRHPGVF CIKE_RAT 101 101
EFFFDRHPGVF CIKD_RAT 54 54
EFFFDRHPGVF CIKD_MOUSE 54 54
EFFFDRHPRSF Q26344 208 208
EFFFDRHPQVF Q9PVD1 54 54
EYFFDRHPGVF Q19464 47 47
EYFFDRHPAVF O62350 79 79
EYFFDRHPGVF Q22012 47 47
ELFFDRHRPTF Q26094 85 85
EFFFDRHRTTF Q09658 111 111
EYYFDRNPSLF O43651 66 66
EYYFDRNPSLF Q9TT17 66 66
EYYFDRNPSLF O88759 66 66
EYYFDRNPSLF O54900 66 66
EFYFDRDPDAF O43527 76 76
EYFFDRSSQAF P97557 103 103
EYFFDRSSQAF Q9UHJ4 100 100
EYFFDRSSQAF Q60565 104 104
EFYFDRNPELF O35174 68 68
EFYFDRHPGFF O35173 70 70
EFYFDRHPGFF O88758 70 70
EFYFDRHPGFF O43652 101 101
EFFFDRNPGAF O43528 114 114
EFFFDRNPGAF Q9UIX4 114 114
EFFFDRNPSAF O73606 108 108
EFFFDRSPCAF Q9QYU3 82 82
EFFFDRSPCAF Q9UJ96 68 68
KVCHANNEL2 Length of motif = 9 Motif number = 2
Voltage-gated potassium channel family motif II - 5
PCODE ST INT
RIFKLSRHS CIK1_HUMAN 301 211
RIFKLSRHS Q9Z1R6 398 234
RIFKLSRHS Q9YGX8 462 217
RIFKLSRHS Q9TS07 393 235
RIFKLSRHS Q91781 295 208
RIFKLSRHS Q61923 351 257
RIFKLSRHS Q28649 564 214
RIFKLSRHS Q16968 328 209
RIFKLSRHS Q16322 350 211
RIFKLSRHS CIK6_RAT 352 258
RIFKLSRHS CIK6_HUMAN 351 257
RIFKLSRHS CIK5_RAT 398 234
RIFKLSRHS CIK5_RABIT 394 237
RIFKLSRHS CIK5_MUSPF 397 235
RIFKLSRHS CIK5_MOUSE 398 234
RIFKLSRHS CIK5_HUMAN 409 236
RIFKLSRHS CIK4_RAT 455 224
RIFKLSRHS CIK4_MUSPF 454 224
RIFKLSRHS CIK4_MOUSE 454 224
RIFKLSRHS CIK4_HUMAN 453 224
RIFKLSRHS CIK4_BOVIN 461 224
RIFKLSRHS CIK3_RAT 323 216
RIFKLSRHS CIK3_MOUSE 326 216
RIFKLSRHS CIK3_HUMAN 321 216
RIFKLSRHS CIK2_XENLA 303 217
RIFKLSRHS CIK2_MOUSE 303 217
RIFKLSRHS CIK2_HUMAN 303 217
RIFKLSRHS CIK1_RAT 301 211
RIFKLSRHS CIK1_MOUSE 301 211
RIFKLSRHS O61335 329 222
RIFKLSRHS Q9XXX0 352 233
RIFKLSRHS CIK1_DROME 371 221
RIFKLSRHS Q9VWZ9 400 221
RIFKLSRHS CIK4_DROME 371 221
RIFKLSRHS CIK2_DROME 359 221
RIFKLSRHS O70259 363 219
RIFKLSRHS Q28656 314 216
RIFKLSRHS Q26597 316 212
RIFKLSRHS Q25376 297 204
RIFKLSRHS Q28293 303 217
RIFKFSRHS O08723 296 204
RIFKFSRHS Q9Z0V1 296 204
RIFKFSRHS Q9Z0V0 296 204
RIFKFSRHS Q9UK17 296 204
RIFKFSRHS Q9UK16 296 204
RIFKFSRHS Q9UH86 296 204
RIFKFSRHS Q9UH85 296 204
RIFKFSRHS Q9TTT5 296 204
RIFKFSRHS Q9PTD3 297 205
RIFKFSRHS Q63286 296 204
RIFKFSRHS Q62897 296 204
RIFKFSRHS P70622 296 204
RIFKFSRHS O60577 296 204
RIFKFSRHS O60576 296 204
RILKLARHS CIKA_HUMAN 302 213
RILKLARHS Q9QUU4 306 213
RILKLARHS Q91593 306 213
RILKLARHS Q91592 310 213
RILKLARHS Q14193 306 213
RILKLARHS Q03717 306 213
RILKLARHS O18868 306 213
RILKLARHS CIKB_RAT 310 213
RILKLARHS CIKB_HUMAN 310 213
RILKLARHS CIKB_CANFA 310 213
RILKLARHS CIKA_RAT 302 213
RIFKFSRHS O75671 301 209
RIFKFSRHS Q03719 301 209
RIFKFSRHS CIKL_DROME 299 206
RIFKFSRHS Q9VW11 299 206
RIFKFSRHS Q26040 299 206
RLFKLTRHS CIKW_DROME 304 241
RLFKLTRHS Q26041 299 241
RIFKLTRHS Q26095 292 185
RIFKFSRHS Q63881 299 206
RIFKFSRHS Q9Z0V2 299 206
RIFKFSRHS Q9UNH9 299 206
RIFKFSRHS Q9UBY7 299 206
RIFKFSRHS Q99249 299 206
RIFKFSRHS P91784 309 213
RIFKFSRHS O57662 300 208
RILKLARHS O18476 498 213
RLCKLTRHS O76457 301 238
RLFKLTRHS Q9VLC6 295 230
RILKLARHS O97045 341 209
RVLKLARHS CIKB_DROME 552 213
RVLKLARHS O76805 552 213
RIFKLTRHF CIKD_HUMAN 320 255
RIFKLTRHF Q9XSJ8 320 255
RIFKLTRHF CIKG_RAT 357 252
RIFKLTRHF CIKG_HUMAN 356 252
RIFKLTRHF CIKF_RAT 424 277
RIFKLTRHF CIKF_MOUSE 423 277
RIFKLTRHF CIKF_HUMAN 423 278
RIFKLTRHF CIKE_RAT 357 245
RIFKLTRHF CIKD_RAT 320 255
RIFKLTRHF CIKD_MOUSE 320 255
RILKLARHS Q26344 433 214
RIFKLTRHF Q9PVD1 301 236
RLFKLTQHS Q19464 576 518
RLFKLTQHH O62350 333 243
RLFKLTHHN Q22012 303 245
RVFKLSRHS Q26094 291 195
RVFKLSRHS Q09658 325 203
RILKLARHS O43651 299 222
RILKLARHS Q9TT17 299 222
RILKLARHS O88759 299 222
RILKLARHS O54900 299 222
RIFKLARHS O43527 299 212
RMLKLGRHS P97557 324 210
RMLKLGRHS Q9UHJ4 321 210
RMLKLGRHS Q60565 325 210
RILKLARHS O35174 304 225
RVLKLARHS O35173 323 242
RVLKLARHS O88758 323 242
RVLKLARHS O43652 351 239
YVMRLARHS O43528 352 227
YVMRLARHS Q9UIX4 352 227
YVMRLARHS O73606 345 226
YVMRLARHS Q9QYU3 310 217
YVMRLARHS Q9UJ96 297 218
KVCHANNEL3 Length of motif = 15 Motif number = 3
Voltage-gated potassium channel family motif III - 5
PCODE ST INT
ELGLLIFFLFIGVIL CIK1_HUMAN 325 15
ELGLLIFFLFIGVIL Q9Z1R6 422 15
ELGLLIFFLFIGVIL Q9YGX8 486 15
ELGLLIFFLFIGVIL Q9TS07 417 15
ELGLLIFFLFIGVIL Q91781 319 15
ELGLLIFFLFIGVIL Q61923 375 15
ELGLLIFFLFIGVIL Q28649 588 15
ELGLLIFFLFIGVIL Q16968 352 15
ELGLLIFFLFIGVIL Q16322 374 15
ELGLLIFFLFIGVIL CIK6_RAT 376 15
ELGLLIFFLFIGVIL CIK6_HUMAN 375 15
ELGLLIFFLFIGVIL CIK5_RAT 422 15
ELGLLIFFLFIGVIL CIK5_RABIT 418 15
ELGLLIFFLFIGVIL CIK5_MUSPF 421 15
ELGLLIFFLFIGVIL CIK5_MOUSE 422 15
ELGLLIFFLFIGVIL CIK5_HUMAN 433 15
ELGLLIFFLFIGVIL CIK4_RAT 479 15
ELGLLIFFLFIGVIL CIK4_MUSPF 478 15
ELGLLIFFLFIGVIL CIK4_MOUSE 478 15
ELGLLIFFLFIGVIL CIK4_HUMAN 477 15
ELGLLIFFLFIGVIL CIK4_BOVIN 485 15
ELGLLIFFLFIGVIL CIK3_RAT 347 15
ELGLLIFFLFIGVIL CIK3_MOUSE 350 15
ELGLLIFFLFIGVIL CIK3_HUMAN 345 15
ELGLLIFFLFIGVIL CIK2_XENLA 327 15
ELGLLIFFLFIGVIL CIK2_MOUSE 327 15
ELGLLIFFLFIGVIL CIK2_HUMAN 327 15
ELGLLIFFLFIGVIL CIK1_RAT 325 15
ELGLLIFFLFIGVIL CIK1_MOUSE 325 15
ELGLLIFFLFIGVVL O61335 353 15
ELGLLIFFLFIGIIL Q9XXX0 376 15
ELGLLIFFLFIGVVL CIK1_DROME 395 15
ELGLLIFFLFIGVVL Q9VWZ9 424 15
ELGLLIFFLFIGVVL CIK4_DROME 395 15
ELGLLIFFLFIGVVL CIK2_DROME 383 15
ELGLLIFFLFIGVVL O70259 387 15
DVGLLIFFLFIGVIL Q28656 338 15
ELGLLVFFLLICVIL Q26597 340 15
ELGLLIFFLVIGVVL Q25376 321 15
ELGLLIFFLFIGVIL Q28293 327 15
ELGFLLFSLTMAIII O08723 320 15
ELGFLLFSLTMAIII Q9Z0V1 320 15
ELGFLLFSLTMAIII Q9Z0V0 320 15
ELGFLLFSLTMAIII Q9UK17 320 15
ELGFLLFSLTMAIII Q9UK16 320 15
ELGFLLFSLTMAIII Q9UH86 320 15
ELGFLLFSLTMAIII Q9UH85 320 15
ELGFLLFSLTMAIII Q9TTT5 320 15
ELGFLLFSLTMAIII Q9PTD3 321 15
ELGFLLFSLTMAIII Q63286 320 15
ELGFLLFSLTMAIII Q62897 320 15
ELGFLLFSLTMAIII P70622 320 15
ELGFLLFSLTMAIII O60577 320 15
ELGFLLFSLTMAIII O60576 320 15
ELGLLILFLAMGIMI CIKA_HUMAN 326 15
ELGLLILFLAMGIMI Q9QUU4 330 15
ELGLLILFLAMGIMI Q91593 330 15
ELGLLILFLAMGIMI Q91592 334 15
ELGLLILFLAMGIMI Q14193 330 15
ELGLLILFLAMGIMI Q03717 330 15
ELGLLILFLAMGIMI O18868 330 15
ELGLLILFLAMGIMI CIKB_RAT 334 15
ELGLLILFLAMGIMI CIKB_HUMAN 334 15
ELGLLILFLAMGIMI CIKB_CANFA 334 15
ELGLLILFLAMGIMI CIKA_RAT 326 15
ELGFLLFSLTMAIII O75671 325 15
ELGFLLFSLTMAIII Q03719 325 15
ELGFLVFSLAMAIII CIKL_DROME 323 15
ELGFLVFSLAMAIII Q9VW11 323 15
ELGFLVFSLAMAIII Q26040 323 15
ELTLLVFFLVLGIVI CIKW_DROME 328 15
ELTLLVFFLVLGIVI Q26041 323 15
ELCMLVLFLAIGVVL Q26095 316 15
ELGFLLFSLTMAIII Q63881 323 15
ELGFLLFSLTMAIII Q9Z0V2 323 15
ELGFLLFSLTMAIII Q9UNH9 323 15
ELGFLLFSLTMAIII Q9UBY7 323 15
ELGFLLFSLTMAIII Q99249 323 15
ELGFLLFSLSMAIII P91784 333 15
ELGFLLFSLTMAIII O57662 324 15
ELGLLMMFLAIGILL O18476 522 15
ELILLIFFLVLGIVI O76457 325 15
ELTLLVFFLVLGIVF Q9VLC6 319 15
ELGLLMLFLAMGIMV O97045 365 15
ELGLLMLFLAMGVLI CIKB_DROME 576 15
ELGLLMLFLAMGVLI O76805 576 15
EFLLLIIFLALGVLI CIKD_HUMAN 344 15
EFLLLIIFLALGVLI Q9XSJ8 344 15
EFLLLIIFLALGVLI CIKG_RAT 381 15
EFLLLIIFLALGVLI CIKG_HUMAN 380 15
EFLLLIIFLALGVLI CIKF_RAT 448 15
EFLLLIIFLALGVLI CIKF_MOUSE 447 15
EFLLLIIFLALGVLI CIKF_HUMAN 447 15
EFLLLIIFLALGVLI CIKE_RAT 381 15
EFLLLIIFLALGVLI CIKD_RAT 344 15
EFLLLIIFLALGVLI CIKD_MOUSE 344 15
ELGMLLMFLAIFILL Q26344 457 15
EFLLLIIFLALGVLI Q9PVD1 325 15
ELFLLVFFVLLGIVI Q19464 600 15
ELILLVFFLILGIVI O62350 357 15
ELMLLVFFLVLGVVV Q22012 327 15
ELMMLAFFLFVMILI Q26094 315 15
EFCLLIFFMAIALVL Q09658 349 15
EVGLLLLFLSVGISI O43651 323 15
EVGLLLLFLSVGISI Q9TT17 323 15
EVGLLLLFLSVGISI O88759 323 15
EVGLLLLFLSVGISI O54900 323 15
ELGLLLMYLAVGIFV O43527 323 15
EVGLLLLFLSVGISI P97557 348 15
EVGLLLLFLSVGISI Q9UHJ4 345 15
EVGLLLLFLSVGISI Q60565 349 15
EVGLLLLYLSVGISI O35174 328 15
EVGILLLYLAVGVSV O35173 347 15
EVGILLLYLAVGVSV O88758 347 15
EVGILLLYLAVGVSV O43652 375 15
EFGLLLLFLCVAIAL O43528 376 15
EFGLLLLFLCVAIAL Q9UIX4 376 15
EFGLLLLFLCVAMAL O73606 369 15
EFGLLLLFLCVAMAL Q9QYU3 334 15
EFGLLLLFLCVAMAL Q9UJ96 321 15
KVCHANNEL4 Length of motif = 12 Motif number = 4
Voltage-gated potassium channel family motif IV - 5
PCODE ST INT
GVLTIALPVPVI CIK1_HUMAN 396 56
GVLTIALPVPVI Q9Z1R6 493 56
GVLTIALPVPVI Q9YGX8 557 56
GVLTIALPVPVI Q9TS07 488 56
GVLTIALPVPVI Q91781 390 56
GVLTIALPVPVI Q61923 446 56
GVLTIALPVPVI Q28649 659 56
GVLTIALPVPVI Q16968 423 56
GVLTIALPVPVI Q16322 445 56
GVLTIALPVPVI CIK6_RAT 447 56
GVLTIALPVPVI CIK6_HUMAN 446 56
GVLTIALPVPVI CIK5_RAT 493 56
GVLTIALPVPVI CIK5_RABIT 489 56
GVLTIALPVPVI CIK5_MUSPF 492 56
GVLTIALPVPVI CIK5_MOUSE 493 56
GVLTIALPVPVI CIK5_HUMAN 504 56
GVLTIALPVPVI CIK4_RAT 550 56
GVLTIALPVPVI CIK4_MUSPF 549 56
GVLTIALPVPVI CIK4_MOUSE 549 56
GVLTIALPVPVI CIK4_HUMAN 548 56
GVLTIALPVPVI CIK4_BOVIN 556 56
GVLTIALPVPVI CIK3_RAT 418 56
GVLTIALPVPVI CIK3_MOUSE 421 56
GVLTIALPVPVI CIK3_HUMAN 416 56
GVLTIALPVPVI CIK2_XENLA 398 56
GVLTIALPVPVI CIK2_MOUSE 398 56
GVLTIALPVPVI CIK2_HUMAN 398 56
GVLTIALPVPVI CIK1_RAT 396 56
GVLTIALPVPVI CIK1_MOUSE 396 56
GVLTIALPVPVI O61335 424 56
GVLCIALPVPVI Q9XXX0 450 59
GVLTIALPVPVI CIK1_DROME 466 56
GVLTIALPVPVI Q9VWZ9 495 56
GVLTIALPVPVI CIK4_DROME 466 56
GVLTIALPVPVI CIK2_DROME 454 56
GVLTISLPVPVI O70259 458 56
GVLTIALPVPVI Q28656 409 56
GVLTIALPVPVI Q26597 411 56
GVLTIALPVPVI Q25376 392 56
GVLTIALPVPVI Q28293 398 56
GVLVIALPVPVI O08723 391 56
GVLVIALPVPVI Q9Z0V1 391 56
GVLVIALPVPVI Q9Z0V0 391 56
GVLVIALPVPVI Q9UK17 391 56
GVLVIALPVPVI Q9UK16 391 56
GVLVIALPVPVI Q9UH86 391 56
GVLVIALPVPVI Q9UH85 391 56
GVLVIALPVPVI Q9TTT5 391 56
GVLVIALPVPVI Q9PTD3 392 56
GVLVIALPVPVI Q63286 391 56
GVLVIALPVPVI Q62897 391 56
GVLVIALPVPVI P70622 391 56
GVLVIALPVPVI O60577 391 56
GVLVIALPVPVI O60576 391 56
GVLVIALPIPII CIKA_HUMAN 397 56
GVLVIALPIPII Q9QUU4 401 56
GVLVIALPIPII Q91593 401 56
GVLVIALPIPII Q91592 405 56
GVLVIALPIPII Q14193 401 56
GVLVIALPIPII Q03717 401 56
GVLVIALPIPII O18868 401 56
GVLVIALPIPII CIKB_RAT 405 56
GVLVIALPIPII CIKB_HUMAN 405 56
GVLVIALPIPII CIKB_CANFA 405 56
GVLVIALPIPII CIKA_RAT 397 56
GVLVIALPVPVI O75671 396 56
GVLVIALPVPVI Q03719 396 56
GVLVIALPVPVI CIKL_DROME 394 56
GVLVIALPVPVI Q9VW11 394 56
GVLVIALPVPVI Q26040 394 56
GVLTIALPVPVI CIKW_DROME 401 58
GVLTIALPVPVI Q26041 396 58
GVLVIALPVPVI Q26095 387 56
GVLVIALPVPVI Q63881 394 56
GVLVIALPVPVI Q9Z0V2 394 56
GVLVIALPVPVI Q9UNH9 394 56
GVLVIALPVPVI Q9UBY7 394 56
GVLVIALPVPVI Q99249 394 56
GVLVIALPVPVI P91784 404 56
GVLVIALPDPVM O57662 396 57
GVLVVALPIPII O18476 593 56
GVLCIALPVPVI O76457 398 58
GVLTIALPVPVI Q9VLC6 392 58
GVLVIALPIPII O97045 436 56
GVLVVALPIPII CIKB_DROME 647 56
GVLVVALPIPII O76805 647 56
GVLTIAMPVPVI CIKD_HUMAN 424 65
GVLTIAMPVPVI Q9XSJ8 424 65
GVLTIAMPVPVI CIKG_RAT 461 65
GVLTIAMPVPVI CIKG_HUMAN 460 65
GVLTIAMPVPVI CIKF_RAT 528 65
GVLTIAMPVPVI CIKF_MOUSE 527 65
GVLTIAMPVPVI CIKF_HUMAN 527 65
GVLTIAMPVPVI CIKE_RAT 461 65
GVLTIAMPVPVI CIKD_RAT 424 65
GVLTIAMPVPVI CIKD_MOUSE 424 65
GVLVIALPIPII Q26344 528 56
GVLTIAMPVPVI Q9PVD1 405 65
GVLTIALPVPVI Q19464 655 40
GVLTIALPVPVI O62350 430 58
GVLTIALPVPVI Q22012 400 58
GVLTIALPVPVV Q26094 386 56
GVLTLALPVPII Q09658 420 56
GILVVALPITII O43651 394 56
GILVVALPITII Q9TT17 394 56
GILVVALPITII O88759 394 56
GILVVALPITII O54900 394 56
GVIAIALPIHPI O43527 394 56
GILVLALPIAII P97557 419 56
GILVLALPIAII Q9UHJ4 416 56
GILVLALPIAII Q60565 420 56
GILVVVLPITLI O35174 398 55
GILVVALPITII O35173 416 54
GILVVALPITII O88758 416 54
GILVVALPITII O43652 445 55
GILLMAFPVTSI O43528 448 57
GILLMAFPVTSI Q9UIX4 448 57
GILLMAFPVTSI O73606 441 57
GILLMAFPVTSI Q9QYU3 406 57
GILLMAFPVTSI Q9UJ96 393 57
User query: Display/Full Code "KVCHANNEL"