WORKLIST ENTRIES (1):
NIAPOTYPTASE View alignment View Structure Potyvirus nuclear inclusion A cysteine protease (C4) signature
Type of fingerprint: COMPOUND with 8 elements
Links:
PRINTS; PR00705 PAPAIN; PR00704 CALPAIN; PR00703 ADVENDOPTASE
PRINTS; PR00797 STREPTOPAIN; PR00707 UBCTHYDRLASE; PR00776 HEMOGLOBNASE
PRINTS; PR00706 PYROGLUPTASE; PR00864 PREPILPTASE; PR00916 2CENDOPTASE
PRINTS; PR00917 SRSVCYSPTASE
INTERPRO; IPR001730
PFAM; PF00863 Peptidase_C4
Creation date 10-SEP-1998; UPDATE 10-JUN-1999
1. RAWLINGS, N.D. AND BARRETT, A.J.
Families of cysteine peptidases.
METHODS ENZYMOL. 244 461-486 (1994).
2. BARRETT, A.J. AND RAWLINGS, N.D.
Families and clans of cysteine peptidases
PERSPECTIVES DRUG DISCOVERY DESIGN 6 1-11 (1996).
3. RAWLINGS, N.D. AND BARRETT, A.J.
MEROPS - Peptidase Database
http://www.bi.bbsrc.ac.uk/merops/merops.htm
4. RAWLINGS, N.D. AND BARRETT, A.J.
Family C4 - Clan PA - NIA proteinase
http://www.bi.bbsrc.ac.uk/merops/famcards/c4.htm
Cysteine protease activity is dependent on an active dyad of cysteine and
histidine, the order and spacing of these residues varying in the known
families. Nearly half of all cysteine proteases are found exclusively
in viruses [1]. Cysteine protease families have been grouped into five
clans (designated CA, CB, CC, CD and CE) on the basis of structural and
functional similarity. Families C1, C2 and C10, which belong to the CA clan,
have a Cys/His catalytic diad, and are loosely termed papain-like. Families
in the CB clan have a His/Cys diad, and contain enzymes from RNA viruses
distantly related to chymotrypsin. Enzymes in clan CC are also from RNA
viruses, but have a papain-like Cys/His active site. The remaining two
clans, CD and CE, contain only one family each. Some families have not
yet been asigned to a clan [1-3].
Two additional clans (PA and PB) have been identified, these containing a
mixture of serine, cysteine and threonine proteases. Clan PA contains a
catalytically-active serine or cysteine nucleophilic residue as part of the
ordered triad His, Asp, Ser (or Cys). Clan PB contains a serine, cysteine or
threonine active residue at the N-terminus of the mature protease [3].
Nuclear inclusion A (NIA) proteases from potyviruses belong to the C4
cysteine protease family, which is part of the PB clan [1,2,4]. Potyviruses
include plant viruses in which the single-stranded RNA encodes a polyprotein
with NIA protease activity, where proteolytic cleavage is specific for
Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself
by Gln+Gly cleavage at both the N- and C-termini. It further processes the
polyprotein by cleavage at five similar sites in the C-terminal half of the
sequence. In addition to its C-terminal protease activity, the NIA protease
contains an N-terminal domain that has been implicated in the transcription
process [1].
NIAPOTYPTASE is an 8-element fingerprint that provides a signature for
potyvirus nuclear inclusion proteases (C4 cysteine protease). The
fingerprint was derived from an initial alignment of 3 sequences: the
motifs were drawn from conserved regions spanning virtually the full
length of the NIA protease domain. Two iterations on OWL30.2 were required
to reach convergence, at which point a true set comprising 52 sequences was
identified. Several partial matches were also found, all of which are NIA
fragments that lack portions of sequence bearing a number of motifs.
An update on SPTR37_9f identified a true set of 41 sequences, and 5
partial matches.
SUMMARY INFORMATION
41 codes involving 8 elements
0 codes involving 7 elements
0 codes involving 6 elements
0 codes involving 5 elements
1 codes involving 4 elements
0 codes involving 3 elements
4 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
8| 41 41 41 41 41 41 41 41
7| 0 0 0 0 0 0 0 0
6| 0 0 0 0 0 0 0 0
5| 0 0 0 0 0 0 0 0
4| 0 1 0 1 0 1 1 0
3| 0 0 0 0 0 0 0 0
2| 0 0 1 2 0 0 4 1
--+-----------------------------------------
| 1 2 3 4 5 6 7 8
True positives..
POLG_PPVNA P89038 POLG_PPVD POLG_PPVSK
POLG_PPVRA POLG_TUMVJ POLG_TUMVQ Q88506
Q88501 POLG_TEV Q88507 Q85057
Q85071 O39734 POLG_PVYN POLG_SBMVG
Q85197 Q85265 POLG_PVYHU POLG_PEMVC
POLG_PRSVH O56075 Q65852 Q65892
P90213 POLG_ZYMVC O36979 POLG_BCMVN
POLG_PSBMV Q88925 POLG_LMVE POLG_TVMV
Q84898 Q85074 POLG_LMV0 O92645
Q82933 POLG_ZYMVR O89525 O73463
O11436
Subfamily: Codes involving 4 elements
Subfamily True positives..
P89201
Subfamily: Codes involving 2 elements
Subfamily True positives..
POLG_BSTV1 O72347 POL1_BAYMG POL1_BAYMJ
PROTEIN TITLES
POLG_PPVNA GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
P89038 RNA GENOME - PLUM POX POTYVIRUS (STRAIN SK 68) (PPV).
POLG_PPVD GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
POLG_PPVSK GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
POLG_PPVRA GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
POLG_TUMVJ GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
POLG_TUMVQ GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
Q88506 GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
Q88501 GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
POLG_TEV GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
Q88507 POLYPROTEIN - TOBACCO ETCH VIRUS (TEV).
Q85057 POLYPROTEIN - PEANUT STRIPE VIRUS.
Q85071 POLYPROTEIN - PEANUT STRIPE VIRUS.
O39734 POLYPROTEIN - SWEET POTATO FEATHERY MOTTLE VIRUS.
POLG_PVYN GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
POLG_SBMVG GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
Q85197 POLYPROTEIN - POTATO VIRUS A.
Q85265 POLYPROTEIN - POTATO VIRUS Y.
POLG_PVYHU GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
POLG_PEMVC GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
POLG_PRSVH GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
O56075 GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
Q65852 POLYPROTEIN - BEAN YELLOW MOSAIC VIRUS.
Q65892 POLYPROTEIN - BEAN YELLOW MOSAIC VIRUS.
P90213 PRSV YK POLYPROTEIN - PAPAYA RINGSPOT VIRUS.
POLG_ZYMVC GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
O36979 GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
POLG_BCMVN GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
POLG_PSBMV GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
Q88925 POLYPROTEIN - TOBACCO VEIN MOTTLING VIRUS (TVMV).
POLG_LMVE GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
POLG_TVMV GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
Q84898 GENOME POLYPROTEIN (CONTAINS: N-TERMINAL PROTEIN; HELPER COM
Q85074 POLYPROTEIN - PEA SEED-BORNE MOSAIC VIRUS.
POLG_LMV0 GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
O92645 POLYPROTEIN - CLOVER YELLOW VEIN VIRUS.
Q82933 JOHNSON GRASS MOSAIC VIRUS PROTEASE 1 AND 3, HELPER COMPONEN
POLG_ZYMVR GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
O89525 POLYPROTEIN - RYEGRASS MOSAIC VIRUS.
O73463 POLYPROTEIN - MAIZE DWARF MOSAIC VIRUS (MDMV).
O11436 POLYPROTEIN - RYEGRASS MOSAIC VIRUS.
P89201 POLYPROTEIN - SWEET POTATO MILD MOTTLE VIRUS.
POLG_BSTV1 GENOME POLYPROTEIN [CONTAINS: N-TERMINAL PROTEIN (P1); HELPE
O72347 POLYPROTEIN - WHEAT STREAK MOSAIC VIRUS.
POL1_BAYMG GENOME POLYPROTEIN 1 [CONTAINS: CYTOPLASMIC INCLUSION PROTEI
POL1_BAYMJ GENOME POLYPROTEIN 1 [CONTAINS: CYTOPLASMIC INCLUSION PROTEI
SCAN HISTORY
OWL30_2 2 65 NSINGLE
SPTR37_9f 2 106 NSINGLE
INITIAL MOTIF SETS
NIAPOTYPTASE1 Length of motif = 23 Motif number = 1
Potyvirus nuclear inclusion A motif I - 1
PCODE ST INT
FEIDNNDDTIEEFFGSAYRKKGK POLG_PVYN 1866 1866
FEIDNNEDTIEEYFGSAYTKKGK POLG_PEMVC 1865 1865
YEVAAEPEALEHYFGSAYNNKGK POLG_TEV 1870 1870
NIAPOTYPTASE2 Length of motif = 22 Motif number = 2
Potyvirus nuclear inclusion A motif II - 1
PCODE ST INT
VGMGKSSRRFINMYGFDPTEYS POLG_PVYN 1894 5
VGMGRTNRRFINMYGFEPGQFS POLG_PEMVC 1893 5
RGMGAKSRKFINMYGFDPTDFS POLG_TEV 1898 5
NIAPOTYPTASE3 Length of motif = 23 Motif number = 3
Potyvirus nuclear inclusion A motif III - 1
PCODE ST INT
KALKIDLMPHNPLKVCDKTNGIA POLG_PVYN 1978 62
KALKVDLTPHNPLRVSDKASAIM POLG_PEMVC 1977 62
KVLKVDLTPHSSLRASEKSTAIM POLG_TEV 1982 62
NIAPOTYPTASE4 Length of motif = 22 Motif number = 4
Potyvirus nuclear inclusion A motif IV - 1
PCODE ST INT
FPERELELRQTGPAVEVDVKDI POLG_PVYN 2002 1
FPEREGELRQTGQAVEVDVCDI POLG_PEMVC 2001 1
FPERENELRQTGMAVPVAYDQL POLG_TEV 2006 1
NIAPOTYPTASE5 Length of motif = 22 Motif number = 5
Potyvirus nuclear inclusion A motif V - 1
PCODE ST INT
SLMRGLRDFNPIAQTVCRLKVS POLG_PVYN 2034 10
TLMRGLRDYNPIAQTVCKLTVK POLG_PEMVC 2033 10
SLFKGPRDYNPISSTICHLTNE POLG_TEV 2040 12
NIAPOTYPTASE6 Length of motif = 18 Motif number = 6
Potyvirus nuclear inclusion A motif VI - 1
PCODE ST INT
IKGRDIILIKMPKDFPVF POLG_PVYN 2108 52
LKGRDMIIIKMPKDFPVF POLG_PEMVC 2107 52
IDGRDMIIIRMPKDFPPF POLG_TEV 2114 52
NIAPOTYPTASE7 Length of motif = 19 Motif number = 7
Potyvirus nuclear inclusion A motif VII - 1
PCODE ST INT
FWKHWIETDNGHCGLPVVS POLG_PVYN 2170 44
FWKHWISTDDGHCGLPIVS POLG_PEMVC 2169 44
FWKHWIQTKDGQCGSPLVS POLG_TEV 2176 44
NIAPOTYPTASE8 Length of motif = 20 Motif number = 8
Potyvirus nuclear inclusion A motif VIII - 1
PCODE ST INT
DGCIVGIHSLANNAHTTNYY POLG_PVYN 2191 2
DGFILGLHSLANNRNSENYY POLG_PEMVC 2190 2
DGFIVGIHSASNFTNTNNYF POLG_TEV 2197 2
FINAL MOTIF SETS
NIAPOTYPTASE1 Length of motif = 23 Motif number = 1
Potyvirus nuclear inclusion A motif I - 2
PCODE ST INT
REVYGDDSTMEAYFGSAYSKKGK POLG_PPVNA 1878 1878
REVYGDDSTMEDYFGSAYSKKGK P89038 1879 1879
REVYGDDSTMEDYFGSAYSKKGK POLG_PPVD 1879 1879
REVYGDDSTMEDYFGSAYSKKGK POLG_PPVSK 1878 1878
REVYGDDSTMADYFGSAYSKKGK POLG_PPVRA 1878 1878
REVYGDDDTIEHFFGDAYTKKGK POLG_TUMVJ 1946 1946
REVYGDDDTIEHFFGDAYTKKGK POLG_TUMVQ 1945 1945
YEVAAEPEALEHYFGSAYNNKGK POLG_TEV 1870 1870
YEVAAEPEALEHYFGSAYNNKGK Q88501 21 21
YEVAAEPEALEHYFGSAYNNKGK Q88506 1870 1870
YEVAAEPEALEHYFGSAYNNKGK Q88507 1870 1870
REVYADDYTMEHTFGEAYTKKGK Q85057 2007 2007
REVYADDYTMEHTFGEAYTKKGK Q85071 2007 2007
FEVHADDGTIEHFFGSAYTKKGK O39734 2244 2244
FEIDNNDDTIEEFFGSAYRKKGK POLG_PVYN 1866 1866
REVYADDYTMEHRFGEAYTKKGK POLG_SBMVG 1872 1872
HYVEAPDSTLEHYFGSAYTKKGK Q85197 1864 1864
FEIDNNDDTIEEFFGSAYRKKGK POLG_PVYHU 1866 1866
FEIDNNDDTIEEFFGSAYRKKGK Q85265 1866 1866
FEIDNNEDTIEEYFGSAYTKKGK POLG_PEMVC 1865 1865
REVYGDDGTIEHYFGEAYTKKGN POLG_PRSVH 2115 2115
REVYGDDGTIEHFFGEAYTKKGK O56075 1887 1887
VEVYADEGTIVENFGSKYTKKGK Q65852 1852 1852
MEVYADEGTIVENFGSKYTKKGK Q65892 1852 1852
REVYGDDGTIEHYFGEAYTKKGN P90213 2115 2115
REIFGDDDTIGRTFGEAYTKRGK POLG_ZYMVC 1872 1872
REIFGDNDTIGRTFGEAYTKRGK O36979 1875 1875
REVYADDYTMEHTFGEAYTKKGK POLG_BCMVN 1881 1881
YEVFADEDTKRHYFGEAYTKKGK POLG_PSBMV 1975 1975
YIMHGEGDTIEHFFGAAYTKKGK Q88925 1837 1837
IEVYGDDATMEHYFGAAYTEKGK POLG_LMVE 2043 2043
YIMHGEGDTIEHFFGAAYTKKGK POLG_TVMV 1819 1819
YIMHGEGDTIEHFFGAAYTKKGK Q84898 1837 1837
FEVYADEDSTRHYFGDSYTKKGK Q85074 1969 1969
IEVYGDDATMEHYFGAAYTEKGK POLG_LMV0 2043 2043
YEVHADEGTLVENFGTRYSKKGK O92645 1870 1870
REVYGDDATIEYYFGEAYTKKPK Q82933 1824 1824
REIFGDDETIGRTFGEAYTKRGK POLG_ZYMVR 1875 1875
YEVYADEREIQENYGEAYTKHGR O89525 1828 1828
YDVTGSKDAIEENFGSAYVKKDK O73463 1819 1819
YEVYADEREIQENYGEAYTKHGR O11436 1828 1828
NIAPOTYPTASE2 Length of motif = 22 Motif number = 2
Potyvirus nuclear inclusion A motif II - 2
PCODE ST INT
RGMGTKTRKFVNMYGYDPTDYN POLG_PPVNA 1906 5
RGMGTKTRKFVNMYGYDPTDYN P89038 1907 5
RGMGTKTRKFVNMYGYDPTDYN POLG_PPVD 1907 5
RGMGTKTRKFVNMYGYDPTDYN POLG_PPVSK 1906 5
RGMGTKTRKFVNMYGYDPTDYN POLG_PPVRA 1906 5
RGLGHKNRKFINMYGFDPEDFS POLG_TUMVJ 1974 5
RGIGHKNRKFINMYGFDPEDFS POLG_TUMVQ 1973 5
RGMGAKSRKFINMYGFDPTDFS POLG_TEV 1898 5
RGMGAKSRKFINMYGFDPTDFS Q88501 49 5
RGMGAKSRKFINMYGFDPTDFS Q88506 1898 5
RGMGAKSRKFINMYGFDPTDFS Q88507 1898 5
KGMGRKTRNFVHMYGVEPENYS Q85057 2037 7
KGMGRKTRNFVHMYGVEPENYS Q85071 2037 7
TGMGSKNRKFINMYGFDPTEYS O39734 2272 5
VGMGKSSRRFINMYGFDPTEYS POLG_PVYN 1894 5
KGMGRKSRNFIHLYGVEPENYS POLG_SBMVG 1902 7
HGMGKKNHRFVNMYGFDPSDYT Q85197 1892 5
VGMGKSSRRFVNMYGFDPTEYS POLG_PVYHU 1894 5
VGMGKSSRRFVNMYGFDPTEYS Q85265 1894 5
VGMGRTNRRFINMYGFEPGQFS POLG_PEMVC 1893 5
HGMGVKTRKFVATYGFKPEDYS POLG_PRSVH 2143 5
KGMGRKTRRFIHMYGFDPTEYS O56075 1917 7
VGMGTKTRKFTNMYGFDPTEYS Q65852 1880 5
TGMGTKTRRFTNMYGFDPTEYS Q65892 1880 5
HGMGVKTRKFVATYGFKPEDYS P90213 2143 5
KGMGRKTRNFVHLYGVEPENYS POLG_ZYMVC 1902 7
KGMGRKTRNFVHLYGVEPEIYS O36979 1905 7
KGMGKKSRGFIHMYGVEPENYS POLG_BCMVN 1911 7
RGMGVKTKKFVNVYGFDPCEYS POLG_PSBMV 2003 5
HGAGTKAHKFVNMYGVSPDEYS Q88925 1865 5
KGMGTKNRRFVNMYGYNPEDYS POLG_LMVE 2071 5
HGAGTKAHKFVNMYGVSPDEYS POLG_TVMV 1847 5
HGAGTKAHKFVNMYGVSPDEYS Q84898 1865 5
RGMGFKTRKFVNVYGFDPCEYS Q85074 1997 5
KGMGTKNRRFVNMYGYNPEDFS POLG_LMV0 2071 5
VGLGAKTRRFTNMYGFDPTEYS O92645 1898 5
HGMGFKTRRFTHIYGIDPTEYD Q82933 1852 5
KGMGRKTRNFVHLYGVEPENYS POLG_ZYMVR 1905 7
KGMGSKTREFTNFYGFDPAEYD O89525 1857 6
VGLGVKQHKFYMLYNFDPQDYN O73463 1847 5
KGTGSKTREFTNFYGFDPAEYD O11436 1857 6
NIAPOTYPTASE3 Length of motif = 23 Motif number = 3
Potyvirus nuclear inclusion A motif III - 2
PCODE ST INT
KALKVDLTPHNPLRVCDKTATIA POLG_PPVNA 1990 62
KALKVDLTPHNPLRVCDKTATIA P89038 1991 62
KALKVDLTPHNPLRVCDKTATIA POLG_PPVD 1991 62
KALKVDLTPHNPLRVCDKTATIA POLG_PPVSK 1990 62
KALKVDLTPHNPLRVCDKTATIA POLG_PPVRA 1990 62
KALKVDLTPHIPLKVCDLHATIA POLG_TUMVJ 2058 62
KALKVDLTPHIPLKVCDLHATIA POLG_TUMVQ 2057 62
KVLKVDLTPHSSLRASEKSTAIM POLG_TEV 1982 62
KVLKVDLTPHSSLRASEKSTAIM Q88501 133 62
KVLKVDLTPHSSLRASEKSTAIM Q88506 1982 62
KVLKVDLTPHSSLRASEKSTAIM Q88507 1982 62
EALKVDLTPHRPTLLCKNSNAIS Q85057 2121 62
EALKVDLTPHRPTLLCKNSNAIS Q85071 2121 62
AALKVDLTPHNPLLACERHSTIA O39734 2356 62
KALKIDLMPHNPLKVCDKTNGIA POLG_PVYN 1978 62
EALKVDLTPHRPTLLCQNSNAIA POLG_SBMVG 1986 62
QILKIDLTPHIPLKVCDATNNIA Q85197 1976 62
KALKIDLMPHNPLKICDKSNGIA POLG_PVYHU 1978 62
KALKIDLMPHNPLKICDKSNGIA Q85265 1978 62
KALKVDLTPHNPLRVSDKASAIM POLG_PEMVC 1977 62
AALEVDLTPHNPLKVCDNKLTIA POLG_PRSVH 2227 62
KALKIDLTPHNPLAVGRGGSSIA O56075 2001 62
KVLKIDLTPHKPLLYSEKFGNIM Q65852 1964 62
KVLKVDLTPHKPLLYSDKFGNIM Q65892 1964 62
TALEVDLTPHNPLKVCDTKLTIA P90213 2227 62
EALKVDLTPHVPLLLCRNTNAIA POLG_ZYMVC 1986 62
EALKVDLTPHVPLLLCRNTNAIA O36979 1989 62
EALKVDLTPHRPTLLCMNSNAIA POLG_BCMVN 1995 62
PALKIDLNPHNPMRVCDKAETIA POLG_PSBMV 2087 62
PILKVDLTPHIPLKVCESNNIAG Q88925 1947 60
AALEIDMTPHNSCQLGTKTNNIA POLG_LMVE 2153 60
PILKVDLTPHIPLKVCESNNIAG POLG_TVMV 1929 60
PILKVDLTPHIPLKVCESNNIAG Q84898 1947 60
PALKIDLTPHNPMRVCDRVETIA Q85074 2081 62
AALEIDMTPHNSCQLGAKTNNIA POLG_LMV0 2153 60
KVMRIDLTPHNPLLASDVSTTIM O92645 1982 62
NALKVDLTLHNPLALCRTNAIAG Q82933 1936 62
EALKFDFTPHVPSLSCSNSNAHA POLG_ZYMVR 1989 62
AARRVDLVPHNPMQVGRLSNNIA O89525 1943 64
NALKVDMTPHEPLRVVTGNNIAG O73463 1931 62
AARRVDLVPHNPMQVGRLSNNIA O11436 1943 64
NIAPOTYPTASE4 Length of motif = 22 Motif number = 4
Potyvirus nuclear inclusion A motif IV - 2
PCODE ST INT
FPEREFELRQTGHPVFVEPNAI POLG_PPVNA 2014 1
FPEREFELRQTGHPIFVEPNAI P89038 2015 1
FPEREFELRQTGHPIFVEPNAI POLG_PPVD 2015 1
FPEREFELRQTGHPTFVEPNAI POLG_PPVSK 2014 1
FPEREFELRQTGHPVFVEPNAI POLG_PPVRA 2014 1
FPERENELRQTGKAQPINIDEV POLG_TUMVJ 2082 1
FPERENELRQTGKAQPINIDEV POLG_TUMVQ 2081 1
FPERENELRQTGMAVPVAYDQL POLG_TEV 2006 1
FPERENELRQTGMAVPVAYDQL Q88501 157 1
FPERENELRQTGMAVPVAYDQL Q88506 2006 1
FPERENELRQTGMAVPVAYDQL Q88507 2006 1
FPEREDELRQTGHPVHIKRSEV Q85057 2145 1
FPEREDELRQTGHPVHIKRSEV Q85071 2145 1
YPEYEGVLRQTGHPIKMTLNDV O39734 2380 1
FPERELELRQTGPAVEVDVKDI POLG_PVYN 2002 1
FPEREDELRQTGLPQVVSKSDV POLG_SBMVG 2010 1
HPDREGELRQTGKGQLLDYAEL Q85197 2000 1
FPERELELRQTGPAIEVDVKDI POLG_PVYHU 2002 1
FPERELELRQTGPAIEVDVKDI Q85265 2002 1
FPEREGELRQTGQAVEVDVCDI POLG_PEMVC 2001 1
FPDREAELRQTGPPRTIQVDQV POLG_PRSVH 2251 1
FPEREYELRQTGKPLEVKKSEV O56075 2025 1
YPEREGELRQTGTAEFVDPKEL Q65852 1988 1
YPEREGELRQTGTAEFIDPKEL Q65892 1988 1
FPDREAELRQTGPPKTILVDQV P90213 2251 1
YPERENELRQTGTPVKVSFKDV POLG_ZYMVC 2010 1
YPERENELRQTGTPIKVSFKEV O36979 2013 1
FPEREDELRQTVPMSAVPKPNE POLG_BCMVN 2019 1
FPEREFELRQSGSATLVPYSEV POLG_PSBMV 2111 1
FPEREGELRRTGPTETLPFDAL Q88925 1970 0
FVDREYELRQTGEARVVAPALI POLG_LMVE 2177 1
FPEREGELRRTGPTETLPFDAL POLG_TVMV 1952 0
FPEREGELRRTGPTETLPFDAL Q84898 1970 0
FPERAYELRQSGPATLISYSDV Q85074 2105 1
YVDREYELRQTGEARVVAPALI POLG_LMV0 2177 1
YPEREGELRQTGKARLVDPSEL O92645 2006 1
FPEYEGELRQTGPSVVIPKEEV Q82933 1959 0
YPERENELRQTGTPVKVSLKDV POLG_ZYMVR 2013 1
FPTHDGELRQSRPSRPLQKDQV O89525 1967 1
FPEYEGTLRQTGRAQVIPSEQV O73463 1954 0
FPTHDGELRQSRPSRPIQKDQV O11436 1967 1
NIAPOTYPTASE5 Length of motif = 22 Motif number = 5
Potyvirus nuclear inclusion A motif V - 2
PCODE ST INT
SLFRGLRDYNPIASSICQLNNS POLG_PPVNA 2052 16
SLFRGLRDYNPIASSICQLNNS P89038 2053 16
SLFRGLRDYNPIASSICQLNNS POLG_PPVD 2053 16
SLFRGLRDYNPIASSICQLNNS POLG_PPVSK 2052 16
SLFRGLRDYNPIASSICQLNNS POLG_PPVRA 2052 16
SMFRGLRDYNPISNNICHLTNV POLG_TUMVJ 2119 15
SMFRGLRDYNPISNNICHLTNV POLG_TUMVQ 2118 15
SLFKGPRDYNPISSTICHLTNE POLG_TEV 2040 12
SLFKGPRDYNPISSTICHLTNE Q88501 191 12
SLFKGPRDYNPISSTICHLTNE Q88506 2040 12
SLFKGPRDYNPISSAICHLTNE Q88507 2040 12
SIYKGLRDYNGISSLVCQLTNI Q85057 2179 12
SIYKGLRDYNGISSLVCQLTNI Q85071 2179 12
SLFRGLRDYNPIASVICHLVNE O39734 2417 15
SLMRGLRDFNPIAQTVCRLKVS POLG_PVYN 2034 10
SVYKGLRDYSGISTLICQLTNS POLG_SBMVG 2044 12
SMFRGVRDYNPISSVICQLENE Q85197 2034 12
SLMRGLRDFNPIAQTVCRVKVS POLG_PVYHU 2034 10
SLMRGLRDFNPIAQTVCRVKVS Q85265 2034 10
TLMRGLRDYNPIAQTVCKLTVK POLG_PEMVC 2033 10
SLCQGMRNYNGIASVVCHLKNT POLG_PRSVH 2285 12
SMCRGLRNYNPIATSICKLVNE O56075 2060 13
SKIGGLRDYNPIASNVCLLENE Q65852 2024 14
SKIGGLRDYNPIAANVCLLENE Q65892 2024 14
SLCQGMRNYNGIASVVCHLKNT P90213 2285 12
SIYKGVRDYNGISTIVCQLTND POLG_ZYMVC 2044 12
SIYKGVRDYNGISTIVCQLTND O36979 2047 12
STYKGLRDYSSVSTLICRLVNS POLG_BCMVN 2048 7
SLHFGLRDYNPIAQAVCRITNT POLG_PSBMV 2152 19
ALLKGVRDFNPISACVCLLENS Q88925 2004 12
TLFRGLRDYNPIASAICLLTNE POLG_LMVE 2217 18
ALLKGVRDFNPISACVWLLENS POLG_TVMV 1986 12
ALLKGVRDFNPISACVWLLENS Q84898 2004 12
SLHFGLRDYNPIAQAVCRITNT Q85074 2146 19
TLFRGLRDYNPIAAAICLLTNE POLG_LMV0 2217 18
NRISGLRDYNPISQNVCLLTNE O92645 2042 14
SAIHGVANYNPISDNICLLKND Q82933 1994 13
SIYKGVRDYNGISTIVCQLTND POLG_ZYMVR 2047 12
SIAKGLRDYHPVSSNLCALEYY O89525 2002 13
SMLTGLVDYTPIANQIGIIENH O73463 1989 13
SIAKGLRDYHPVSSNLCALEYY O11436 2002 13
NIAPOTYPTASE6 Length of motif = 18 Motif number = 6
Potyvirus nuclear inclusion A motif VI - 2
PCODE ST INT
CKGRDIVIIRLPKDFPPF POLG_PPVNA 2126 52
CKGRDIVIIRLPKDFPPF P89038 2127 52
CKGRDIVIIRLPKDFPPF POLG_PPVD 2127 52
CKGRDILIIRLPKDFPPF POLG_PPVSK 2126 52
CKGRDIVIIRLPKDFPPF POLG_PPVRA 2126 52
IPDRDLLLIRLPKDVPPF POLG_TUMVJ 2193 52
IPDRDLLLIRLPKDVPPF POLG_TUMVQ 2192 52
IDGRDMIIIRMPKDFPPF POLG_TEV 2114 52
IDGRDMIIIRMPKDFPPF Q88501 265 52
IDGRDMIIIRMPKDFPPF Q88506 2114 52
IDGRDMMLIRMPKDFPPF Q88507 2114 52
IEGKDAILIRMPKDFPPF Q85057 2253 52
IEGKDAILIRMPKDFPPF Q85071 2253 52
CADRDILIIRMPKDIPPF O39734 2491 52
IKGRDIILIKMPKDFPVF POLG_PVYN 2108 52
IQGRDVILIRMPKDFPPF POLG_SBMVG 2118 52
VEGRDVLIIKMPKDFPPF Q85197 2108 52
IKGRDIIIIKMPKDFPVF POLG_PVYHU 2108 52
IKGRDIIIIKMPKDFPVF Q85265 2108 52
LKGRDMIIIKMPKDFPVF POLG_PEMVC 2107 52
VGKTDLLIIRMPKDFPPF POLG_PRSVH 2358 51
MAKKDMIIIKMPCDVPPF O56075 2134 52
IDGHDLLLIQMPKDFPVF Q65852 2098 52
IEGHDLLLIQMPKDFPVF Q65892 2098 52
VGKTDLLIIRMPKDFPPF P90213 2358 51
IEGKDVVLVRMPKDFPPF POLG_ZYMVC 2118 52
IEGKDVVLVRMPKDFPPF O36979 2121 52
IEGKDAILIRMPRDFPPF POLG_BCMVN 2122 52
VKDKDMVIVRLPKDFPPF POLG_PSBMV 2226 52
VEGRDILVIKMAKDFPPF Q88925 2078 52
CEGRDIMVIILTPDFPPF POLG_LMVE 2291 52
VEGRDIIVIKMAKDFPPF POLG_TVMV 2060 52
VEGRDIIVIKMAKDFPPF Q84898 2078 52
VKDKDMVIVRLPKDFPPF Q85074 2220 52
CEGRDIMVIILTPDFPPF POLG_LMV0 2291 52
LEGHDILLIQLPRDFPVF O92645 2116 52
IEGRDIILIRLPKDHPPF Q82933 2068 52
IEGKDVVLVRMPKTFPPF POLG_ZYMVR 2121 52
LCGSDIIVIKGPKDMPPA O89525 2076 52
VKGRDLVIIQLPKDFPPF O73463 2063 52
LCGSDIIVIKGPKDMPPA O11436 2076 52
NIAPOTYPTASE7 Length of motif = 19 Motif number = 7
Potyvirus nuclear inclusion A motif VII - 2
PCODE ST INT
FWKHWISTKDGHCGLPIVS POLG_PPVNA 2188 44
FWKHWISTKDGHCGLPIVS P89038 2189 44
FWKHWISTKDGHCGLPIVS POLG_PPVD 2189 44
FWKHWISTKDGHCGLPIVS POLG_PPVSK 2188 44
FWKHWISTKDGHCGLPIVS POLG_PPVRA 2188 44
FWKHWISTKDGQCGSPMVS POLG_TUMVJ 2255 44
FWKHWISTKDGQCGSPMVS POLG_TUMVQ 2254 44
FWKHWIQTKDGQCGSPLVS POLG_TEV 2176 44
FWKHWIQTKDGQCGSPLVS Q88501 327 44
FWKHWIQTKDGQCGSPLVS Q88506 2176 44
FWKHWIQTKDGHCGSPLVS Q88507 2176 44
FWIHWITTQDGYCGLPLVS Q85057 2315 44
FWIHWITTQDGYCGLPLVS Q85071 2315 44
FWKHWIDTKDGHCGLPLVS O39734 2553 44
FWKHWIETDNGHCGLPVVS POLG_PVYN 2170 44
FWIHWITTQDGFCGLPLVS POLG_SBMVG 2180 44
FWKHWISTKEGHCGSPIVS Q85197 2170 44
FWKHWIETNDGHCGLPVVS POLG_PVYHU 2170 44
FWKHWIETNDGHCGLPVVS Q85265 2170 44
FWKHWISTDDGHCGLPIVS POLG_PEMVC 2169 44
FGCHWISTNDGDCGNPLVS POLG_PRSVH 2419 43
YWRHWVSTKDGDCGLPLVS O56075 2196 44
FFKHWISTVAGQCGNPMVS Q65852 2160 44
FFKHWISTVAGQCGNPMVS Q65892 2160 44
FGSHWISTNDGDCGNPLVS P90213 2419 43
YWIHWISTNEGDCGLPMVS POLG_ZYMVC 2180 44
YWIHWISTNEGDCGLPMVS O36979 2183 44
FWVHWITTQDGDCGLPMVS POLG_BCMVN 2184 44
YWKHWITTKEGHCGLPAVA POLG_PSBMV 2288 44
FWQHWITTKDGQCGSPLVS Q88925 2140 44
LWKHWITTKDGHCGLPLVS POLG_LMVE 2353 44
FWQHWITTKDGQCGSPLVS POLG_TVMV 2122 44
FWQHWITTKDGQCGSPLVS Q84898 2140 44
YWKHWITTKEGHCGLPVVA Q85074 2282 44
LWKHWITTKDGHCGLPLVS POLG_LMV0 2353 44
FYKHWISTVAGHCGNPMVS O92645 2178 44
FWKHWISTKAGYCGLPLVN Q82933 2129 43
YWIHWISTNEGDCGLPMVS POLG_ZYMVR 2183 44
FWKHWITTKYGNCGLPMVS O89525 2137 43
FWSHWISTTGGQCGLPLVD O73463 2125 44
FWKHWITTKYGNCGLPMVS O11436 2137 43
NIAPOTYPTASE8 Length of motif = 20 Motif number = 8
Potyvirus nuclear inclusion A motif VIII - 2
PCODE ST INT
DGSILGLHSLANSTNTQNFY POLG_PPVNA 2209 2
DGSILGLHSLANSTNTQNFY P89038 2210 2
DGSILGLHSLANSTNTQNFY POLG_PPVD 2210 2
DGSILGLHSLANSTNTQNFY POLG_PPVSK 2209 2
DGSILGLHSLANSTNTQNFY POLG_PPVRA 2209 2
DGKILGLHSLANFQNSINYF POLG_TUMVJ 2276 2
DGKILGLHSLANFQNSINYF POLG_TUMVQ 2275 2
DGFIVGIHSASNFTNTNNYF POLG_TEV 2197 2
DGFIVGIHSASNFTNTNNYF Q88501 348 2
DGFIVGIHSASNFTNTNNYF Q88506 2197 2
DGFIVGIHSASNFTNTNNYF Q88507 2197 2
DGLIVGFHGLTSNDSNKNFF Q85057 2336 2
DGLIVGFHGLTSNDSNKNFF Q85071 2336 2
DGALLGVHSLSNLTNTQNFF O39734 2574 2
DGCIVGIHSLANNAHTTNYY POLG_PVYN 2191 2
DGHIVGIHGLTSNDSEKNFF POLG_SBMVG 2201 2
DGAILGIHSLSNMTNTSNYF Q85197 2191 2
DGCLVGIHSLANNVQTTNYY POLG_PVYHU 2191 2
DGCLVGIHSLANNVQTTNYY Q85265 2191 2
DGFILGLHSLANNRNSENYY POLG_PEMVC 2190 2
DGFIVGLHSLSTSTGDQNFF POLG_PRSVH 2440 2
DGAILGLHGLTSTKSDRNYF O56075 2217 2
DGFIVGIHSLTAISGDLNVF Q65852 2181 2
DGFIVGIHSLTAISGDLNVF Q65892 2181 2
DGYIVGLHSLSTSTGDQNFF P90213 2440 2
DGKIIGVHGLASTVSSKNYF POLG_ZYMVC 2201 2
DGKIIGIHGLASTVSSKNYF O36979 2204 2
DGYIVGIHGLTSNETSRNFF POLG_BCMVN 2205 2
DGHIVGIHNLGGENTNINYF POLG_PSBMV 2309 2
DGAILGIHSLTHTTNGSNYF Q88925 2161 2
DGYIVGIHSATSSRQTQNYH POLG_LMVE 2374 2
DGNILGIHSLTHTTNGSNYF POLG_TVMV 2143 2
DGNILGIHSLTHTTNGSNYF Q84898 2161 2
DGHIVGIHNLGGENTNINYF Q85074 2303 2
DGYIVGIHSATSSRQTQNYH POLG_LMV0 2374 2
DGFIVGIHSLASLTGDVNIF O92645 2199 2
TKEDVGIHSLKATNNSVNYF Q82933 2150 2
DGKLIGLHGKASTVSSKNYF POLG_ZYMVR 2204 2
TMDIIGLHSLGAQNSNENYF O89525 2158 2
TRSIVGVHSLASVNANVNFF O73463 2146 2
TMDIIGLHSLGAQNSNENYF O11436 2158 2
User query: Display/Full Code "NIAPOTYPTASE"