WORKLIST ENTRIES (1):
XPGRADSUPER View alignment View Structure Xeroderma pigmentosum group G/yeast RAD superfamily signature
Type of fingerprint: COMPOUND with 5 elements
Links:
PRINTS; PR00851 XRODRMPGMNTB; PR00852 XRODRMPGMNTD; PR00066 XRODRMPGMNTG
INTERPRO; IPR001532
PROSITE; PS00841 XPG_1; PS00842 XPG_2
PFAM; PF00752 XPG_N; PF00867 XPG_I
Creation date 08-MAR-1998; UPDATE 27-JUN-1999
1. TANAKA, K. AND WOOD, R.D.
Xeroderma pigmentosum and nucleotide excision-repair of DNA.
TRENDS BIOCHEM.SCI. 19 83-86 (1994).
2. SCHERLY, D., NOUSPIKEL, T., CORLET, J., UCLA, C., BAIROCH, A.
AND CLARKSON, S.G.
Complementation of the DNA repair defect in xeroderma pigmentosum
group G cells by a human cDNA related to yeast RAD2.
NATURE 363 182-185 (1993).
3. CARR, A.M., SHELDRICK, K.S., MURRAY, J.M., AL-HARITHY, R., WATTS, F.Z.
AND LEHMANN, A.R.
Evolutionary conservation of excision repair in Schizosaccharomyces pombe -
evidence for a family of sequences related to the Saccharomyces cerevisiae
rad2 gene.
NUCLEIC ACIDS RES. 21 1345-1349 (1993).
4. O'DONOVAN, A., SCHERLY, D., CLARKSON, S.G. AND WOOD, R.D.
Isolation of active recombinant XPG protein, a human DNA repair
endonuclease.
J.BIOL.CHEM. 269 15965-15968 (1994).
5. O'DONOVAN, A., DAVIES, A.A., MOGGS, J.G., WEST, S.C. AND WOOD, R.D.
XPG endonuclease makes the 3' incision in human DNA nucleotide excision
repair.
NATURE 371 432-435 (1994).
6. HABRAKEN, Y., SUNG, P., PRAKASH, L. AND PRAKASH, S.
Yeast excision repair gene RAD2 encodes a single-stranded DNA endonuclease.
NATURE 366 365-368 (1993).
Defects in DNA repair proteins can give rise, in humans, to the autosomal
recessive disorders xeroderma pigmentosum (XP) and Cockayne's syndrome [1,2].
XP is characterised by a high incidence of sunlight-induced skin cancer,
the effect of skin-cell hypersensitivity to UV resulting from defects in
the nucleotide excision pathway. Seven XP complementation groups have
been identified: XP-A to XP-G.
XP-G is one of the most rare and phenotypically heterogeneous of XP, showing
anything from slight to extreme dysfunction in DNA excision repair [3,4].
XP-G can be corrected by a 133kDa nuclear protein, XPGC [1]. XPGC is an
acidic protein that confers normal UV resistance in expressing cells [4].
It is a magnesium-dependent, single-strand DNA endonuclease that makes
structure-specific endonucleolytic incisions in a DNA substrate containing
a duplex region and single-stranded arms [4,5]. XPGC cleaves one strand of
the duplex at the border with the single-stranded region [5].
XPG belongs to a family of proteins that includes RAD2 from budding yeast
and rad13 from fission yeast, which are single-stranded DNA endonucleases
[5,6]; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from
fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'->3'
double-stranded DNA exonuclease that may act in a pathway that corrects
mismatched base pairs; yeast DHS1, and yeast DIN7.
Sequence analysis reveals that similarities within the family are largely
confined to two well-conserved domains, the first of which is located at
the N-terminal extremity (the N-region), the second lying towards the
C-terminus (the I-region). The I-region contains a perfectly conserved
hexapeptide, EAEAQC, the Glu and Cys residues of which may be involved in
the excision repair mechanism.
XPGRADSUPER is a 5-element fingerprint that provides a signature for the
XPG/RAD superfamily. The fingerprint was derived from an initial alignment
of 17 sequences: the motifs were drawn from short conserved regions within
the N- and C-terminal portions of the alignment - motifs 1 and 2 lie within
the N-domain, motif 2 including the region encoded by PROSITE pattern XPG_1
(PS00841); and motifs 3-5 lie in the I domain, motif 3 including the region
encoded by PROSITE pattern XPG_2 (PS00842), which contains a putative
catalytic core pentapeptide. Two iterations on OWL30.0 were required to
reach convergence, at which point a true set comprising 23 sequences was
identified. Several partial matches were also found: CELT12A25 is a
C.elegans sequence that fails to match the first 2 motifs; and YA31_SCHPO,
YEN1_YEAST and SCU13615 are yeast proteins that match only 2 motifs.
An update on SPTR37_9f identified a true set of 32 sequences, and 2
partial matches.
SUMMARY INFORMATION
32 codes involving 5 elements
0 codes involving 4 elements
0 codes involving 3 elements
2 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
5| 32 32 32 32 32
4| 0 0 0 0 0
3| 0 0 0 0 0
2| 0 0 2 2 0
--+--------------------------
| 1 2 3 4 5
True positives..
FEN1_HUMAN FEN1_MOUSE P70054 P70040
Q61528 Q64248 XPG_MOUSE O57351
XPG_HUMAN XPG_XENLA RAD2_SCHPO O65251
RA27_YEAST O59728 RA13_SCHPO RAD2_YEAST
O50123 O60545 O75214 O75466
O29975 Q58839 EXO1_SCHPO Q24557
Q24558 EXO1_YEAST O27670 DIN7_YEAST
O44737 O62245 Q22418 YA31_SCHPO
Subfamily: Codes involving 2 elements
Subfamily True positives..
Q02463 YEN1_YEAST
PROTEIN TITLES
FEN1_HUMAN FLAP ENDONUCLEASE-1 (MATURATION FACTOR 1) (MF1) - HOMO SAPIE
FEN1_MOUSE FLAP ENDONUCLEASE-1 - MUS MUSCULUS (MOUSE).
P70054 XFEN1B - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
P70040 5' NUCLEASE XFEN1A - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
Q61528 DNA-REPAIR PROTEIN COMPLEMENTING XP-G CELLS HOMOLOG (XERODER
Q64248 DNA-REPAIR PROTEIN COMPLEMENTING XP-G CELLS HOMOLOG (XERODER
XPG_MOUSE DNA-REPAIR PROTEIN COMPLEMENTING XP-G CELLS HOMOLOG (XERODER
O57351 FLAP ENDONUCLEASE 1 - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
XPG_HUMAN DNA-REPAIR PROTEIN COMPLEMENTING XP-G CELLS (XERODERMA PIGME
XPG_XENLA DNA-REPAIR PROTEIN COMPLEMENTING XP-G CELLS HOMOLOG (XERODER
RAD2_SCHPO DNA REPAIR PROTEIN RAD2 - SCHIZOSACCHAROMYCES POMBE (FISSION
O65251 F21E10.3 PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
RA27_YEAST STRUCTURE SPECIFIC ENDONUCLEASE RAD27 - SACCHAROMYCES CEREVI
O59728 DNA REPAIR PROTEIN RAD13 - SCHIZOSACCHAROMYCES POMBE (FISSIO
RA13_SCHPO DNA REPAIR PROTEIN RAD13 - SCHIZOSACCHAROMYCES POMBE (FISSIO
RAD2_YEAST DNA REPAIR PROTEIN RAD2 - SACCHAROMYCES CEREVISIAE (BAKER'S
O50123 343AA LONG HYPOTHETICAL 5' NUCLEASE - PYROCOCCUS HORIKOSHII.
O60545 PUTATIVE 5'-3' EXONUCLEASE HEX1 - HOMO SAPIENS (HUMAN).
O75214 HEX1 - HOMO SAPIENS (HUMAN).
O75466 EXONUCLEASE I - HOMO SAPIENS (HUMAN).
O29975 DNA REPAIR PROTEIN RAD2 (RAD2) - ARCHAEOGLOBUS FULGIDUS.
Q58839 HYPOTHETICAL PROTEIN MJ1444 - METHANOCOCCUS JANNASCHII.
EXO1_SCHPO EXONUCLEASE I (EXO I) - SCHIZOSACCHAROMYCES POMBE (FISSION Y
Q24557 TOSCA - DROSOPHILA MELANOGASTER (FRUIT FLY).
Q24558 TOSCA - DROSOPHILA MELANOGASTER (FRUIT FLY).
EXO1_YEAST EXONUCLEASE I (EXO I) (DHS1 PROTEIN) - SACCHAROMYCES CEREVIS
O27670 DNA REPAIR PROTEIN RAD2 - METHANOBACTERIUM THERMOAUTOTROPHIC
DIN7_YEAST DNA-DAMAGE INDUCIBLE PROTEIN DIN7 - SACCHAROMYCES CEREVISIAE
O44737 F57B10.6 PROTEIN - CAENORHABDITIS ELEGANS.
O62245 F45G2.3 PROTEIN - CAENORHABDITIS ELEGANS.
Q22418 SIMILAR TO S. CEREVISIAE DNA REPAIR PROTEIN RAD2 - CAENORHAB
YA31_SCHPO HYPOTHETICAL 57.8 KD PROTEIN C18B11.01C IN CHROMOSOME I - SC
Q02463 UNKNOWN ORF 3' TO GLN3 - SACCHAROMYCES CEREVISIAE (BAKER'S Y
YEN1_YEAST HYPOTHETICAL 87.4 KD PROTEIN IN GLN3-SAH1 INTERGENIC REGION
SCAN HISTORY
OWL30_0 2 50 NSINGLE
SPTR37_9f 4 34 NSINGLE
INITIAL MOTIF SETS
XPGRADSUPER1 Length of motif = 15 Motif number = 1
Xeroderma pigmentosa group G/RAD protein motif I - 1
PCODE ST INT
GKILAVDISIWLNQA XPG_HUMAN 24 24
GKVLAVDISIWLNQA XPG_MOUSE 24 24
GKILAVDISIWLNQA XPG_XENLA 24 24
GKILAVDISIWLNQA A54439 24 24
GKILAVDISIWLNQA I58009 24 24
GKVLAVDISIWLNQA A57650 24 24
GKVLAVDISIWLNQA MMU40796 24 24
GRKVAIDASMSLYQF RA27_YEAST 28 28
GRKVAIDASMSLYQF RAD2_SCHPO 28 28
GRKVAVDASMCIYQF XLU68141 28 28
GRKVAIDASMSIYQF FEN1_HUMAN 28 28
NKRLAIDASIWIYQF RA13_SCHPO 24 24
DKRMAVDASIWIYQF RAD2_YEAST 24 24
GKKVAIDGMNALYQF C64480 21 21
GEVLAIDGYAWLHRA EXO1_YEAST 24 24
GKTLGVDGYVWLHKA EXO1_SCHPO 24 24
YQTLAIDGYAWLHRA DIN7_YEAST 24 24
XPGRADSUPER2 Length of motif = 20 Motif number = 2
Xeroderma pigmentosa group G/RAD protein motif II - 1
PCODE ST INT
PIFVFDGDAPLLKKQTLVKR XPG_HUMAN 72 33
PIFVFDGDAPLLKKQTLAKR XPG_MOUSE 72 33
PIFVFDGEAPLLKRQTLAKR XPG_XENLA 72 33
PIFVFDGDAPLLKKQTLVKR A54439 72 33
PIFVFDGDAPLLKKQTLVKR I58009 72 33
PIFVFDGDAPLLKKQTLAKR A57650 72 33
PIFVFDGDAPLLKKQTLAKR MMU40796 72 33
PCYVFDGKPPDLKSHELTKR RA27_YEAST 82 39
PCFVFDGKPPTLKSGELAKR RAD2_SCHPO 82 39
PVYVFDGKPPQMKSGELAKR XLU68141 81 38
PVYVFDGKPPQLKSGELAKR FEN1_HUMAN 81 38
PVFVFDGGAPSLKRQTIQKR RA13_SCHPO 72 33
PVFVFDGGVPVLKRETIRQR RAD2_YEAST 72 33
PIWVFDGEPPKLKEKTRKVR C64480 75 39
PYLVFDGDAIPVKKSTESKR EXO1_YEAST 73 34
PLIVFDGGPLPCKASTEQKR EXO1_SCHPO 73 34
PYIVFDGDSLFVKNHTETRR DIN7_YEAST 73 34
XPGRADSUPER3 Length of motif = 18 Motif number = 3
Xeroderma pigmentosa group G/RAD protein motif III - 1
PCODE ST INT
LRLFGIPYIQAPMEAEAQ XPG_HUMAN 776 684
LRLFGVPYIQAPMEAEAQ XPG_MOUSE 789 697
LQLFGIPYIVAPMEAEAQ XPG_XENLA 809 717
LRLFGIPYIQAPMEAEAQ A54439 776 684
LRLFGIPYIQAPMEAEAQ I58009 776 684
LRLFGVPYIQAPMEAEAQ A57650 775 683
LRLFGVPYIQAPMEAEAQ MMU40796 775 683
LGLMGIPYIIAPTEAEAQ RA27_YEAST 143 41
LELMGIPFVNAPCEAEAQ RAD2_SCHPO 146 44
LSLMGIPYVDAPCEAEAT XLU68141 145 44
LSLMGIPYLDAPSEAEAS FEN1_HUMAN 145 44
LRLFGLPYIVAPQEAEAQ RA13_SCHPO 765 673
LSRFGIPYITAPMEAEAQ RAD2_YEAST 779 687
LSLMGIPYVEAPSEGEAQ C64480 139 44
CKLNGIRYIVAPFEADSQ EXO1_YEAST 137 44
LREHGIESIVAPYEADAQ EXO1_SCHPO 137 44
CKLHSIPYIVAPFEADPQ DIN7_YEAST 137 44
XPGRADSUPER4 Length of motif = 21 Motif number = 4
Xeroderma pigmentosa group G/RAD protein motif IV - 1
PCODE ST INT
LDLTDQTSGTITDDSDIWLFG XPG_HUMAN 797 3
LDLSDQTSGTITDDSDIWLFG XPG_MOUSE 810 3
LDLTDQTSGTITDDSDIWLFG XPG_XENLA 830 3
LDLTDQTSGTITDDSDIWLFG A54439 797 3
LDLTDQTSGTITDDSDIWLFG I58009 797 3
LDLSDQTSGTITDDSDIWLFG A57650 796 3
LDLSDQTSGTITDDSDIWLFG MMU40796 796 3
LAKKGKVYAAASEDMDTLCYR RA27_YEAST 164 3
LARSGKVYAAASEDMDTLCFQ RAD2_SCHPO 167 3
LVKAGKVYAAATEDMDALTFG XLU68141 166 3
LVKAGKVYAAATEDMDCLTFG FEN1_HUMAN 166 3
LLELKLVDGIVTDDSDVFLFG RA13_SCHPO 786 3
LLQLNLVDGIITDDSDVFLFG RAD2_YEAST 800 3
MAKKGDVWAVVSQDYDALLYG C64480 160 3
LEQKNIVQGIISEDSDLLVFG EXO1_YEAST 158 3
LEKENIIDGIITEDSDMLVFG EXO1_SCHPO 158 3
LEKMGLIQGIISEDSDLLVFG DIN7_YEAST 158 3
XPGRADSUPER5 Length of motif = 16 Motif number = 5
Xeroderma pigmentosa group G/RAD protein motif V - 1
PCODE ST INT
LINLAYLLGSDYTEGI XPG_HUMAN 851 33
LINLAYLLGSDYTEGI XPG_MOUSE 864 33
LINLAYLLGSDYTEGI XPG_XENLA 884 33
LINLAYLLGSDYTEGI A54439 851 33
LINLAYLLGSDYTGNT I58009 851 33
LINLAYLLGSDYTEGI A57650 850 33
LINLAYLLGSDYTEGI MMU40796 850 33
FVDLCIMLGCDYCESI RA27_YEAST 221 36
FVDLCILLGCDYCEPI RAD2_SCHPO 224 36
FVDLCILLGSDYCETI XLU68141 223 36
FVDLCILLGSDYCESI FEN1_HUMAN 223 36
LIKLAHLLGSDYTMGL RA13_SCHPO 840 33
MIELAQLLGSDYTNGL RAD2_YEAST 854 33
LIDIAIFMGTDYNPGG C64480 214 33
IITMVCLSGCDYTNGI EXO1_YEAST 217 38
LRHMAIFSGCDYTDGV EXO1_SCHPO 215 36
FRNLVCLAGCDYTSGI DIN7_YEAST 217 38
FINAL MOTIF SETS
XPGRADSUPER1 Length of motif = 15 Motif number = 1
Xeroderma pigmentosa group G/RAD protein motif I - 4
PCODE ST INT
GRKVAIDASMSIYQF FEN1_HUMAN 28 28
GRKVAIDASMSIYQF FEN1_MOUSE 28 28
GRKVAVDASMCIYQF P70054 28 28
GRKVAVDASMCIYQF P70040 28 28
GKVLAVDISIWLNQA Q61528 24 24
GKVLAVDISIWLNQA Q64248 24 24
GKVLAVDISIWLNQA XPG_MOUSE 24 24
GRKVAIDASMCIYQF O57351 28 28
GKILAVDISIWLNQA XPG_HUMAN 24 24
GKILAVDISIWLNQA XPG_XENLA 24 24
GRKVAIDASMSLYQF RAD2_SCHPO 28 28
GRKIAVDASMSIYQF O65251 28 28
GRKVAIDASMSLYQF RA27_YEAST 28 28
NKRLAIDASIWIYQF O59728 24 24
NKRLAIDASIWIYQF RA13_SCHPO 24 24
DKRMAVDASIWIYQF RAD2_YEAST 24 24
GKKIAIDALNAIYQF O50123 21 21
GQVVAVDTYCWLHKG O60545 24 24
GQVVAVDTYCWLHKG O75214 24 24
GQVVAVDTYCWLHKG O75466 24 24
GKKIAVDAFNTLYQF O29975 21 21
GKKVAIDGMNALYQF Q58839 21 21
GKTLGVDGYVWLHKA EXO1_SCHPO 24 24
GSTVAVDTYCWLHKG Q24557 24 24
GSTVAVDTYCWLHKG Q24558 24 24
GEVLAIDGYAWLHRA EXO1_YEAST 24 24
GRTVAVDAANTLYQF O27670 21 21
YQTLAIDGYAWLHRA DIN7_YEAST 24 24
GKKLAIDVSIWIYQA O44737 24 24
GKSVAIDVSCLLHRG O62245 672 672
DKTLSIDGHIWLYES Q22418 24 24
YPVLAVDGNLLLYRF YA31_SCHPO 30 30
XPGRADSUPER2 Length of motif = 20 Motif number = 2
Xeroderma pigmentosa group G/RAD protein motif II - 4
PCODE ST INT
PVYVFDGKPPQLKSGELAKR FEN1_HUMAN 81 38
PVYVFDGKPPQLKSGELAKR FEN1_MOUSE 79 36
PVYVFDGKPPQMKSGELAKR P70054 81 38
PVYVFDGKPPQMKSGELAKR P70040 81 38
PIFVFDGDAPLLKKQTLAKR Q61528 72 33
PIFVFDGDAPLLKKQTLAKR Q64248 72 33
PIFVFDGDAPLLKKQTLAKR XPG_MOUSE 72 33
PVYVFDGKPPQMKSGELAKR O57351 81 38
PIFVFDGDAPLLKKQTLVKR XPG_HUMAN 72 33
PIFVFDGEAPLLKRQTLAKR XPG_XENLA 72 33
PCFVFDGKPPTLKSGELAKR RAD2_SCHPO 82 39
PVYVFDGKPPELKRQELAKR O65251 115 72
PCYVFDGKPPDLKSHELTKR RA27_YEAST 82 39
PVFVFDGGAPSLKRQTIQKR O59728 72 33
PVFVFDGGAPSLKRQTIQKR RA13_SCHPO 72 33
PVFVFDGGVPVLKRETIRQR RAD2_YEAST 72 33
PAYVFDGKPPEFKRKELEKR O50123 75 39
PILVFDGCTLPSKKEVERSR O60545 73 34
PILVFDGCTLPSKKEVERSR O75214 73 34
PILVFDGCTLPSKKEVERSR O75466 73 34
PVFVFDGEPPEFKKAEIEER O29975 75 39
PIWVFDGEPPKLKEKTRKVR Q58839 75 39
PLIVFDGGPLPCKASTEQKR EXO1_SCHPO 73 34
PILVFDGQHLPAKALTEKRR Q24557 73 34
PILVFDGQHLPAKALTEKRR Q24558 73 34
PYLVFDGDAIPVKKSTESKR EXO1_YEAST 73 34
VIYVFDGRSHHLKGETVSRR O27670 75 39
PYIVFDGDSLFVKNHTETRR DIN7_YEAST 73 34
PVFVFDGPQVPPLKRQVLEA O44737 68 29
VVMVFDGRPLPAKKGTNEER O62245 721 34
PIVVFDNINASSSAHESKDQ Q22418 71 32
PIVVFDNLKPNDFKAEEHEK YA31_SCHPO 76 31
XPGRADSUPER3 Length of motif = 18 Motif number = 3
Xeroderma pigmentosa group G/RAD protein motif III - 4
PCODE ST INT
LSLMGIPYLDAPSEAEAS FEN1_HUMAN 145 44
LSLMGIPYLDAPSEAEAS FEN1_MOUSE 143 44
LSLMGIPYVDAPCEAEAT P70054 145 44
LTLMGIPYVDAPCEAEAT P70040 145 44
LRLFGVPYIQAPMEAEAQ Q61528 775 683
LRLFGVPYIQAPMEAEAQ Q64248 775 683
LRLFGVPYIQAPMEAEAQ XPG_MOUSE 789 697
LTLMGIPYVDAPCEAEAT O57351 145 44
LRLFGIPYIQAPMEAEAQ XPG_HUMAN 776 684
LQLFGIPYIVAPMEAEAQ XPG_XENLA 809 717
LELMGIPFVNAPCEAEAQ RAD2_SCHPO 146 44
LRLMGVPVVEATSEAEAQ O65251 179 44
LGLMGIPYIIAPTEAEAQ RA27_YEAST 143 41
LRLFGLPYIVAPQEAEAQ O59728 764 672
LRLFGLPYIVAPQEAEAQ RA13_SCHPO 765 673
LSRFGIPYITAPMEAEAQ RAD2_YEAST 779 687
LQLMGIPIIQAPSEGEAQ O50123 139 44
ARSQGVDCLVAPYEADAQ O60545 137 44
ARSQGVDCLVAPYEADAQ O75214 137 44
ARSQGVDCLVAPYEADAQ O75466 137 44
LSYMGIPFVDAPSEGEAQ O29975 138 43
LSLMGIPYVEAPSEGEAQ Q58839 139 44
LREHGIESIVAPYEADAQ EXO1_SCHPO 137 44
CRSRNVDCIVAPYEADAQ Q24557 137 44
CRSRNVDCIVAPYEADAQ Q24558 137 44
CKLNGIRYIVAPFEADSQ EXO1_YEAST 137 44
LELLGIPYVQAPGEGEAQ O27670 139 44
CKLHSIPYIVAPFEADPQ DIN7_YEAST 137 44
LTNAGIPWIESPGEAEAQ O44737 485 397
RSMTNVDIVVAPYEADAQ O62245 786 45
LTELGIKVIIAPGDGEAQ Q22418 120 29
LKILGIPASFSPIGVEAE YA31_SCHPO 285 189
XPGRADSUPER4 Length of motif = 21 Motif number = 4
Xeroderma pigmentosa group G/RAD protein motif IV - 4
PCODE ST INT
LVKAGKVYAAATEDMDCLTFG FEN1_HUMAN 166 3
LAKAGKVYAAATEDMDCLTFG FEN1_MOUSE 164 3
LVKAGKVYAAATEDMDALTFG P70054 166 3
LVKAGKVYAAATEDMDALTFG P70040 166 3
LDLSDQTSGTITDDSDIWLFG Q61528 796 3
LDLSDQTSGTITDDSDIWLFG Q64248 796 3
LDLSDQTSGTITDDSDIWLFG XPG_MOUSE 810 3
LVKAGKVYAAATEDMDALTFG O57351 166 3
LDLTDQTSGTITDDSDIWLFG XPG_HUMAN 797 3
LDLTDQTSGTITDDSDIWLFG XPG_XENLA 830 3
LARSGKVYAAASEDMDTLCFQ RAD2_SCHPO 167 3
LCKSGKVYGVASEDMDSLTFG O65251 200 3
LAKKGKVYAAASEDMDTLCYR RA27_YEAST 164 3
LLELKLVDGIVTDDSDVFLFG O59728 785 3
LLELKLVDGIVTDDSDVFLFG RA13_SCHPO 786 3
LLQLNLVDGIITDDSDVFLFG RAD2_YEAST 800 3
MASKGDVYASASQDYDSLLFG O50123 160 3
LNKAGIVQAIITEDSDLLAFG O60545 158 3
LNKAGIVQAIITEDSDLLAFG O75214 158 3
LNKAGIVQAIITEDSDLLAFG O75466 158 3
MAAKGDVEYTGSQDYDSLLFG O29975 159 3
MAKKGDVWAVVSQDYDALLYG Q58839 160 3
LEKENIIDGIITEDSDMLVFG EXO1_SCHPO 158 3
LNRADVAQYIITEDSDLTLFG Q24557 158 3
LNRADVAQYIITEDSDLTLFG Q24558 158 3
LEQKNIVQGIISEDSDLLVFG EXO1_YEAST 158 3
MVKMGDAWAVASQDYDCLLFG O27670 160 3
LEKMGLIQGIISEDSDLLVFG DIN7_YEAST 158 3
LERLGLVDGVVSDDSDVWAFG O44737 506 3
LVQEKLVDAVITEDSDLIVFG O62245 807 3
LEDLGVTSGCITTDFDYFLFG Q22418 141 3
ISQNNLAYAVATQDTDVLLLG YA31_SCHPO 308 5
XPGRADSUPER5 Length of motif = 16 Motif number = 5
Xeroderma pigmentosa group G/RAD protein motif V - 4
PCODE ST INT
FVDLCILLGSDYCESI FEN1_HUMAN 223 36
FVDLCILLGSDYCESI FEN1_MOUSE 221 36
FVDLCILLGSDYCETI P70054 223 36
FVDLCILLGSDYCETI P70040 223 36
LINLAYLLGSDYTEGI Q61528 850 33
LINLAYLLGSDYTEGI Q64248 850 33
LINLAYLLGSDYTEGI XPG_MOUSE 864 33
FVDLCILLGSDYCETI O57351 223 36
LINLAYLLGSDYTEGI XPG_HUMAN 851 33
LINLAYLLGSDYTEGI XPG_XENLA 884 33
FVDLCILLGCDYCEPI RAD2_SCHPO 224 36
FIDLCILSGCDYCDSI O65251 257 36
FVDLCIMLGCDYCESI RA27_YEAST 221 36
LIKLAHLLGSDYTMGL O59728 839 33
LIKLAHLLGSDYTMGL RA13_SCHPO 840 33
MIELAQLLGSDYTNGL RAD2_YEAST 854 33
LIELAILVGTDYNPGG O50123 226 45
FRYMCILSGCDYLSSL O60545 215 36
FRYMCILSGCDYLSSL O75214 215 36
FRYMCILSGCDYLSSL O75466 215 36
LIDIAILVGTDYNEGV O29975 225 45
LIDIAIFMGTDYNPGG Q58839 214 33
LRHMAIFSGCDYTDGV EXO1_SCHPO 215 36
FRRMCILSGCDYLDSL Q24557 216 37
FRRMCILSGCDYLDSL Q24558 216 37
IITMVCLSGCDYTNGI EXO1_YEAST 217 38
LVDMALLVGTDFNEGV O27670 216 35
FRNLVCLAGCDYTSGI DIN7_YEAST 217 38
YISIALLSGGDYCAGL O44737 565 38
FRRICILSGCDYLQAG O62245 868 40
LISTAILLGCDYFQRG Q22418 202 40
FQDYCLMCGTDFTSRI YA31_SCHPO 365 36
User query: Display/Full Code "XPGRADSUPER"