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Clade file format

The user is allowed to specify some invariant clades to reduce the number of possible topologies when using mlphase. A clade file contains a list of monophyletic clades in newick format. All studied species must appear once (and only once) in the file, either alone or in a clade. Here is a simple clade file example for 6 species:

Gowri-Shankar Vivek 2003-04-24