Previous: Using likelihood
An example of a valid control file for likelihood can be found in
In its control file, the likelihood program requires the specification of:
a DATAFILE block: see the data file block section.
a MODEL block: see the model block section.
Tree file: the name of the file containing the phylogeny, i.e.,
tree in the Newick format (section 2.1.2),
with branch lengths values.
Tree file = data/mammals-consensus.tree
Model parameters file: the name of the file containing
parameter values for the model defined in the MODEL block above.
Simulate can help you to produce this file.
Model parameters file = data/mammals-consensus.model