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RNA7A model

The RNA7A model is the most general of the seven state models. It has 21 rate parameters (including the reference rate AU $\leftrightarrow$GC) and 7 frequencies. All mismatches are treated in a single state MM. The RNA7A model is described by the following rate matrix (table 2.8).

Table 2.8: RNA7A transition matrix
\begin{table}\begin{displaymath} Q = m_r \times \left( \begin{array}{cccccccc} ... ...9} & \pi_{CG}\alpha_{20} & * \\ \end{array}\right) \end{displaymath}\end{table}



Gowri-Shankar Vivek 2003-04-24